Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00514 ATGGATTCGGAGGAGGATGAGTTTGATATGCATGACGCTCACGATGTTGATGACGAAGATTTTTATAGCGGAGGCGAAGACGATGCAGCTGCAGTGGACAGTGAAGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGTGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTCCTTTCAATTCCCAAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGTGTCAGTAAAGTGCACGATGAATGGTTTGCTGATGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAACCTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGTACATCTATTAATGATGGTCCTGGATGTCTGACATTGAGATGTCCTGAACCATCTTGTGTTGCTGTTGTTGGCCAAGATACGATTAATATGTTGGCTTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATAGGAAGACCAAATGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACGTGCCGCTGCTCTTATAGCTTTTGCTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTAGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCATGGTCAGATCACGGTGAGCGAACTGGTGGATTTTATGCGTGTAACCGTTATGAAACGGCGAAGCAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTATGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATCTCGAGAAGCTAAGTGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAGTGGACTTATGCATATGGTTTTTATTTACCCGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGGCTGGAACGACTTCATCAGTGTGTGGAAAAAGAACTTCAAGTTTATCTCAATGCAGAAGGCCCGTCGAAAGATTTCAATGAGTTTCGCACGAAGCTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGAGCACTTGAAAATGGTCTATCAGACGTGAACTCTCACGGTGCTTGCAGCCGTGCAGCCAGCTCGAAGATCATGGATGGCAGCAGTAGCAGGAGTAGAGGCGGGAAGATTGATTGTTCTCAGCCTCAGCCTCACATTGGAGCAGGGCGGTTCTCACTCTTTCTGCTAATGGAAGCTGTGCTATTGCATTCAAATTTATCAATAATGGAAAACACAAATACTAAAAGAGGCTGTGCAACAGTAAGCAATTATGGGAGTCGGAACAGAACTAACGAAGCAAGCTTTAGCGGACAAGATTCTACTATAGGAATCAAGAATGCTTTTTTCTCCCGGAGAAGTTTTCAAATGAGAAGAGTACAATGGAAATTAGCCTTTGCCTTGAACACTAGTGGGATCTCAGGCAACAGGGAGGAAGGAGATAGGGTCGAAAGTGACAACTCTGGTCTTGGACGCACTAGATTAGGAAGAATAGTGAGTGCAGGGGGTAAAGTACTGCTGGAGAAGCTGAATTCGGCTAGAAAAAACTTCCCCATGAAGATATTTTTGCTTCTTTTGGGTTTTTACACGGCAAATGCACTTGCTACGATTCTTGGGCAGACAGGCGATTGGGATGTGTTGGTTGCTGGAGTAGTAGTTGCTGCCATCGAAGGGATTGGGATGCTAATGTACAAAAGGCGTCCTTCTCCATCCTCAAATGGAAGATTACAGTCTTTTGTTGTGATGATGAACTACTGGAAAGCAGGTGTCTGCTTAGGCCTCTTTGTAGATGCATTTAAGTTGGGGAGTTAA 2322 43.58 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSEDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPKVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKPVVDFSNAKVLACGICFETYPSDRICAASCGHPFCNACWTGYISTSINDGPGCLTLRCPEPSCVAVVGQDTINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASSKIMDGSSSRSRGGKIDCSQPQPHIGAGRFSLFLLMEAVLLHSNLSIMENTNTKRGCATVSNYGSRNRTNEASFSGQDSTIGIKNAFFSRRSFQMRRVQWKLAFALNTSGISGNREEGDRVESDNSGLGRTRLGRIVSAGGKVLLEKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKRRPSPSSNGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8162243 8175787 - BLOR08060 Blo17g00514 72902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00514 773 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Blo17g00514 773 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Blo17g00514 773 SUPERFAMILY RING/U-box 211 279 - -
Blo17g00514 773 Pfam Ariadne domain 359 518 IPR045840 -
Blo17g00514 773 MobiDBLite consensus disorder prediction 1 33 - -
Blo17g00514 773 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 537 - -
Blo17g00514 773 SUPERFAMILY RING/U-box 291 339 - -
Blo17g00514 773 Coils Coil 358 378 - -
Blo17g00514 773 SUPERFAMILY RING/U-box 137 222 - -
Blo17g00514 773 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 -
Blo17g00514 773 Pfam IBR domain, a half RING-finger domain 289 337 IPR002867 -
Blo17g00514 773 Gene3D - 268 521 - -
Blo17g00514 773 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 537 IPR031127 GO:0004842|GO:0016567
Blo17g00514 773 SMART ibrneu5 210 272 IPR002867 -
Blo17g00514 773 SMART ibrneu5 276 346 IPR002867 -
Blo17g00514 773 Pfam Protein of unknown function (DUF565) 710 773 IPR007572 -
Blo17g00514 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Blo17g00514 773 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00514 Blo-Chr17:8162243 Blo04g01135 Blo-Chr4:18587297 9.57E-12 dispersed
Blo01g00201 Blo-Chr1:2657711 Blo17g00514 Blo-Chr17:8162243 0 transposed
Blo03g00874 Blo-Chr3:34559841 Blo17g00514 Blo-Chr17:8162243 2.49E-13 transposed
Blo15g00712 Blo-Chr15:23101189 Blo17g00514 Blo-Chr17:8162243 6.54E-46 transposed
Blo17g00514 Blo-Chr17:8162243 Blo18g00504 Blo-Chr18:6355363 1.52E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00514 K11968 - jre:108982156 1001.5