Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00514 ATGGATTCGGAGGAGGATGAGTTTGATATGCATGACGCTCACGATGTTGATGACGAAGATTTTTATAGCGGAGGCGAAGACGATGCAGCTGCAGTGGACAGTGAAGATGCTGATTTGGCCGATTACGAGTTCATTGATAACGATTCAGATGATTCTGACGGTGTTATCTCGCATCGGCACCAGCCAAACTTTACCATCTTGAGTGAGGCAGATATACACCAGCGCCAAGAGGATGATATCATGAGAGTATCTACCGTCCTTTCAATTCCCAAGGTTTCAGCTAGCATCCTGCTCCGCTATTATAATTGGAGTGTCAGTAAAGTGCACGATGAATGGTTTGCTGATGAAGAAAAGGTTCGTAGGGCTGTTGGCTTGCTGGCCAAACCAGTTGTTGATTTTTCCAATGCGAAAGTACTAGCTTGTGGCATATGTTTTGAAACCTATCCTTCTGATAGGATTTGTGCTGCTTCTTGTGGTCATCCATTTTGCAATGCGTGTTGGACAGGTTATATTAGTACATCTATTAATGATGGTCCTGGATGTCTGACATTGAGATGTCCTGAACCATCTTGTGTTGCTGTTGTTGGCCAAGATACGATTAATATGTTGGCTTCAGATGAAGATAAACAGAAGTATTCTCGTTACTTTGTAAGATCTTATATTGAAGACAATAGGAAGACCAAATGGTGTCCTGCTCCAGGATGTGATTATGCTGTGGATTTTATTGTTGGAAGTGGAAGCTATGATGTGACGTGCCGCTGCTCTTATAGCTTTTGCTGGAATTGTACAGAAGAAGCTCATCGTCCTGTTGATTGTAGCACAGTGGCCAAATGGATTTTGAAGAACAGTGCTGAATCAGAAAACATGAATTGGATTTTGGCTAATTCAAAACCTTGTCCAAAATGCAAGAGACCTATTGAAAAAAATCAAGGGTGTATGCATATTACTTGTACACCCCCTTGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGTGCATGGTCAGATCACGGTGAGCGAACTGGTGGATTTTATGCGTGTAACCGTTATGAAACGGCGAAGCAGGAGGGTGTGTATGATGAAGCTGAAAAGAGAAGGGAAATGGCGAAGAACTCTCTTGAGAGGTACACTCATTACTATGAAAGATGGGCTACAAACCAATCGTCCAGGCAAAAAGCACTTACAGATCTCCATCAAATGCAAAATCTCGAGAAGCTAAGTGACGTACAGTGCCAGCCTGAATCACAGCTCAAGTTCATCACAGAAGCCTGGCTTCAGATAGTTGAGTGTAGAAGAGTACTCAAGTGGACTTATGCATATGGTTTTTATTTACCCGAGTACGAACATGCAAAGAGACGTTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGGCTGGAACGACTTCATCAGTGTGTGGAAAAAGAACTTCAAGTTTATCTCAATGCAGAAGGCCCGTCGAAAGATTTCAATGAGTTTCGCACGAAGCTTGCTGGACTAACTAGCGTGACTAGGAACTACTTTGAGAATCTGGTCCGAGCACTTGAAAATGGTCTATCAGACGTGAACTCTCACGGTGCTTGCAGCCGTGCAGCCAGCTCGAAGATCATGGATGGCAGCAGTAGCAGGAGTAGAGGCGGGAAGATTGATTGTTCTCAGCCTCAGCCTCACATTGGAGCAGGGCGGTTCTCACTCTTTCTGCTAATGGAAGCTGTGCTATTGCATTCAAATTTATCAATAATGGAAAACACAAATACTAAAAGAGGCTGTGCAACAGTAAGCAATTATGGGAGTCGGAACAGAACTAACGAAGCAAGCTTTAGCGGACAAGATTCTACTATAGGAATCAAGAATGCTTTTTTCTCCCGGAGAAGTTTTCAAATGAGAAGAGTACAATGGAAATTAGCCTTTGCCTTGAACACTAGTGGGATCTCAGGCAACAGGGAGGAAGGAGATAGGGTCGAAAGTGACAACTCTGGTCTTGGACGCACTAGATTAGGAAGAATAGTGAGTGCAGGGGGTAAAGTACTGCTGGAGAAGCTGAATTCGGCTAGAAAAAACTTCCCCATGAAGATATTTTTGCTTCTTTTGGGTTTTTACACGGCAAATGCACTTGCTACGATTCTTGGGCAGACAGGCGATTGGGATGTGTTGGTTGCTGGAGTAGTAGTTGCTGCCATCGAAGGGATTGGGATGCTAATGTACAAAAGGCGTCCTTCTCCATCCTCAAATGGAAGATTACAGTCTTTTGTTGTGATGATGAACTACTGGAAAGCAGGTGTCTGCTTAGGCCTCTTTGTAGATGCATTTAAGTTGGGGAGTTAA 2322 43.58 MDSEEDEFDMHDAHDVDDEDFYSGGEDDAAAVDSEDADLADYEFIDNDSDDSDGVISHRHQPNFTILSEADIHQRQEDDIMRVSTVLSIPKVSASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLAKPVVDFSNAKVLACGICFETYPSDRICAASCGHPFCNACWTGYISTSINDGPGCLTLRCPEPSCVAVVGQDTINMLASDEDKQKYSRYFVRSYIEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSRQKALTDLHQMQNLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEYEHAKRRFFEYLQGEAESGLERLHQCVEKELQVYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGACSRAASSKIMDGSSSRSRGGKIDCSQPQPHIGAGRFSLFLLMEAVLLHSNLSIMENTNTKRGCATVSNYGSRNRTNEASFSGQDSTIGIKNAFFSRRSFQMRRVQWKLAFALNTSGISGNREEGDRVESDNSGLGRTRLGRIVSAGGKVLLEKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKRRPSPSSNGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8162243 8175787 - BLOR08060 Blo17g00514 72902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00514 773 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Blo17g00514 773 ProSiteProfiles TRIAD supradomain profile. 137 350 IPR044066 -
Blo17g00514 773 SUPERFAMILY RING/U-box 211 279 - -
Blo17g00514 773 Pfam Ariadne domain 359 518 IPR045840 -
Blo17g00514 773 MobiDBLite consensus disorder prediction 1 33 - -
Blo17g00514 773 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 537 - -
Blo17g00514 773 SUPERFAMILY RING/U-box 291 339 - -
Blo17g00514 773 Coils Coil 358 378 - -
Blo17g00514 773 SUPERFAMILY RING/U-box 137 222 - -
Blo17g00514 773 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 -
Blo17g00514 773 Pfam IBR domain, a half RING-finger domain 289 337 IPR002867 -
Blo17g00514 773 Gene3D - 268 521 - -
Blo17g00514 773 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 537 IPR031127 GO:0004842|GO:0016567
Blo17g00514 773 SMART ibrneu5 210 272 IPR002867 -
Blo17g00514 773 SMART ibrneu5 276 346 IPR002867 -
Blo17g00514 773 Pfam Protein of unknown function (DUF565) 710 773 IPR007572 -
Blo17g00514 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Blo17g00514 773 ProSiteProfiles Zinc finger RING-type profile. 141 187 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00514 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - jre:108982156 1001.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00514 Blo-Chr17:8162243 Blo04g01135 Blo-Chr4:18587297 9.57E-12 dispersed
Blo01g00201 Blo-Chr1:2657711 Blo17g00514 Blo-Chr17:8162243 0 transposed
Blo03g00874 Blo-Chr3:34559841 Blo17g00514 Blo-Chr17:8162243 2.49E-13 transposed
Blo15g00712 Blo-Chr15:23101189 Blo17g00514 Blo-Chr17:8162243 6.54E-46 transposed
Blo17g00514 Blo-Chr17:8162243 Blo18g00504 Blo-Chr18:6355363 1.52E-23 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00712 BCT 107 478 ARIADNE family AT4G34370 62.1 2.1e-147 519.2
Blo15g00712 BCT 1 434 ARIADNE family AT2G16090 66.7 1.9e-189 659.1
Blo15g00712 BCT 1 412 ARIADNE family AT3G27710 57.7 1.3e-154 543.5
Blo17g00514 . 9 545 ARIADNE family AT1G05890 63.5 1.8e-218 755.7
Blo01g00201 . 196 671 ARIADNE family AT1G05890 71.7 6.4e-216 747.3
Blo18g00504 . 67 465 ARIADNE family AT1G05890 74.9 3.8e-192 668.3
Blo17g00514 . 18 540 ARIADNE family AT1G65430 78.2 8.2e-253 869.8
Blo01g00201 . 183 724 ARIADNE family AT1G65430 68.0 1.5e-230 795.8
Blo18g00504 . 67 468 ARIADNE family AT1G65430 81.1 5.6e-209 724.2
Blo17g00514 . 11 453 ARIADNE family AT2G31780 53.6 1.7e-144 509.6
Blo01g00201 . 139 587 ARIADNE family AT2G31780 55.9 5.4e-143 504.6
Blo18g00504 . 68 384 ARIADNE family AT2G31780 58.2 7.1e-119 424.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00514 Blo_Chr17 FPKM 29.257933 30.284138 17.151114 13.641124 22.324165 22.717871 23.208958 6.960539 7.031294 9.634116