Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00570 ATGGATCCAAAGCAGCCGCAGCAGGAAGTGGCACCCAACTTCCTTAGCCTGCCGCAGTGGAGGATGGCTGAGAACAAAGCTGCAGAAATGAAGGATTTCCAGATAGTGGTTGCAGAAAAGGAAGAAGGAAAAAAGCAGTTGGCGCCAAAAAGAAGCTCAAACAAAGACAGACACACAAAAGTGGAAGGAAGAGGAAGAAGAATAAGGATGCCGGCTCTATGTGCGGCGAGAATTTTTCAATTGACGAGGGAATTGGGTCATAAATCGGATGGAGAAACCATACAGTGGCTGTTGCAGCAGGCTGAGCCGTCCATAATGGCGGCAACGGGCACAGGAACGATTCCAGCATCGGCTATGGCGGCGGCGGGTGTGTCTGTTTCCCAGCAGGGTGCTTCTTTATCATCAGGACTGCATCAAAAGATTGATGAACTAGCTGGGTCCAGTATGGGGGCTGGAAGTAGGACCAGTTGGGCCATGGTGGGTGGTAATTTGATGGGGCGACCCCATATGGGCTCCGGTCTTTTGCCCTCAGTGGGGAGTTTTGGATTTCAATCATCGTCTTCTCCAAATTCAACTAATTTGGGAGATAACAGCAGTTCAAATTACCTTCAGAAAATAGGGTTTTCTCAGTTCGATCAATTACCAGCTGCCAATATGAGTTTCAGCTCAATTTTAGGCGGGAACATGAACAACCAGCCATTGCCAGGGCTGGAGCTTGGGTTGTCTCAGGATGGCCATATCGGGATTTTGAATCCTCAAGCTTTAAGCCAGATTTATCAGCAAATTGGACACGCTAGAGTTCTTCAGCAGAATCAGCCTCCTGCCAAAAACCATACGGAAGGGTCGGGACAGTGA 855 48.89 MDPKQPQQEVAPNFLSLPQWRMAENKAAEMKDFQIVVAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIMAATGTGTIPASAMAAAGVSVSQQGASLSSGLHQKIDELAGSSMGAGSRTSWAMVGGNLMGRPHMGSGLLPSVGSFGFQSSSSPNSTNLGDNSSSNYLQKIGFSQFDQLPAANMSFSSILGGNMNNQPLPGLELGLSQDGHIGILNPQALSQIYQQIGHARVLQQNQPPAKNHTEGSGQ 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10478760 10479614 - BLOR08116 Blo17g00570 72958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00570 284 Pfam TCP family transcription factor 53 142 IPR017887 -
Blo17g00570 284 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 270 IPR005333 GO:0003700
Blo17g00570 284 ProSiteProfiles TCP domain profile. 54 108 IPR017887 -
Blo17g00570 284 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 22 270 - -
Blo17g00570 284 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00570 - - - jre:108984550 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00611 Blo-Chr11:6109106 Blo17g00570 Blo-Chr17:10478760 7.40E-105 dispersed
Blo12g00477 Blo-Chr12:22409012 Blo17g00570 Blo-Chr17:10478760 1.28E-34 dispersed
Blo13g00013 Blo-Chr13:195089 Blo17g00570 Blo-Chr17:10478760 3.18E-41 dispersed
Blo17g00570 Blo-Chr17:10478760 Blo16g01121 Blo-Chr16:39702350 5.19E-37 dispersed
Blo17g00570 Blo-Chr17:10478760 Blo10g00401 Blo-Chr10:6870883 2.21E-112 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13529 PF03634 TCP 5.00E-31 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00570 Blo_Chr17 FPKM 32.602543 32.509224 43.299599 41.181046 24.560966 25.900229 28.823387 40.264702 38.856354 50.504353