Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00576 ATGAGCTTCCAAGATTTTCAGAATCAGAATGCAGGTAGGGCAAAGTCTGCCTCCGCCGCGCACAACCCATCGCAGGCCGTAGCCGCATCGATATTTCAGATCAACACCGCTGTTTCCACCTATCGTCGTCTCGTTGATGCAATCGGTACCGTGAAGGATACTCCAGATCACCGGCAGAAGCTGCAGGCAACCAGACAGAAAATTCTGCAACTCGTGAAAGAAACTTCTGCCAAACTAAAATCATTGACTGAATCCAATCGCGATAGCAATGTTACTGCAAACAAGAAAATCGAAGATGCTAAACTCGCCAAAGACTTCCAAACTGTTCTGCAAGAATTTCAGAAAGTTCAACAGCTTGCCTCAGAGCGTGAATCAACTTACGCACCTTCAGTTCCCATTGGCAATTTTCCTTTTGGAGACAGCTCTAGCTCCAGCGAGCCCACCATGGATCAGGACAGCCAACCCTTCCTCATGCAGCAAAAAAGATTGTGGGAAACAATGCAACTTCAACAATTCATTTCAGTTGATGAGTTAAAAATGCTTTTAATTTCAGCTTCTGAGAAAACATGCTTCTTCAAAATATTCAGGCAGGAGTTGATCTTGCTGGACAATGAGATTTCTTTCAATGAAGCTATGATCGATGAAAGGGAACAGGGCATCAGAGACATAGAGGAGCAAATTGGAGAGGCAAATGAAATATTCAGAGACCTTGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGATATTCACTCCAACATCGACTCCTCTGCTGTCGCGACAACTCAAGCTCGAGTCCAGTTGGCCAAGGCTTCCAAAAGCACGAAAACCAGATCATCATGGTGTTGGTGGGTGATAGGAATCGTTATCGTCGTTGTGGTGGTTGTTGTTCTTCTTGTTGTACTTTTGTAG 915 44.81 MSFQDFQNQNAGRAKSASAAHNPSQAVAASIFQINTAVSTYRRLVDAIGTVKDTPDHRQKLQATRQKILQLVKETSAKLKSLTESNRDSNVTANKKIEDAKLAKDFQTVLQEFQKVQQLASERESTYAPSVPIGNFPFGDSSSSSEPTMDQDSQPFLMQQKRLWETMQLQQFISVDELKMLLISASEKTCFFKIFRQELILLDNEISFNEAMIDEREQGIRDIEEQIGEANEIFRDLAVLVHEQGVVIDDIHSNIDSSAVATTQARVQLAKASKSTKTRSSWCWWVIGIVIVVVVVVVLLVVLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10693580 10695507 + BLOR08122 Blo17g00576 72964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00576 304 Pfam Syntaxin-like protein 28 127 IPR006011 GO:0016020
Blo17g00576 304 Gene3D - 3 131 - -
Blo17g00576 304 MobiDBLite consensus disorder prediction 1 20 - -
Blo17g00576 304 PANTHER SYNTAXIN-22-LIKE 196 301 - -
Blo17g00576 304 SUPERFAMILY t-snare proteins 21 265 IPR010989 GO:0016020|GO:0016192
Blo17g00576 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Blo17g00576 304 Gene3D - 204 304 - -
Blo17g00576 304 SMART tSNARE_6 205 272 IPR000727 -
Blo17g00576 304 PANTHER SYNTAXIN 196 301 IPR045242 -
Blo17g00576 304 PANTHER SYNTAXIN 16 174 IPR045242 -
Blo17g00576 304 CDD SNARE_Qa 213 271 - -
Blo17g00576 304 Pfam SNARE domain 247 298 IPR000727 -
Blo17g00576 304 PANTHER SYNTAXIN-22-LIKE 16 174 - -
Blo17g00576 304 SMART SynN_4 12 125 IPR006011 GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo17g00576 Blo18g00562 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00576 Blo-Chr17:10693580 Blo01g00722 Blo-Chr1:9192879 1.73E-10 dispersed
Blo17g00576 Blo-Chr17:10693580 Blo18g00562 Blo-Chr18:7935770 3.64E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00576 - K08488 rcn:112187643 345.51