Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00642 ATGGGCCTTCTTTCTAATAATATCTTCATCATTTTCTTCATCATTTTCACTCCTTTTTCCTTCCAAATCACCGGCATTTTGATTGCCGAAGGACAGTGGATTGCAGGGAAGGACTTCCATGGGCTTCACTTAGAGCAGCTTGATTTCATGGAGGAAAATGGCGGTGGAAATCAAAAGAGCAAGATAAAGAGAGTGGCTGGAGTTGACGAGAGTGAAGTAAAGGAAATTTTGATAGTTGAAAAGTTCAGAGCTTTACTTGGATTCAAGAGCTTGTATTTGAAAAACCCATCAAATGCCGACTCTGCAGAAAGTTTTTCTCCATCTCCTTCTCCACTGTCCGCCATTGAAGCTCCAGCTCCAGCTCCTCTTCCATCCCTTCTTACCCATAATCATTCTCATCCTCCGCTGCATCATTCTCGAGGGGCTAAAAATGGCCACAAAGTACAAACCCAGAATGAAGATCAAGTCAATGTCAGAACTCTGGTTGCAGTTCTTGTCCCTACAGGAGCAGCCATTTTGATTTGTGCTCTTGGGTTCTTCTGGGTCTGCAAGAAATTCAGAAAACAGAGAAAGAAATCCTCAAGAACAATTTCAGTGACTGAAAAAAAAGGAGTCAGAACAGCTGCCTCAAATTGTGTTAATCCTCAGAAATCAGACAAGTACAAGGTAAGCTCAAATCATGGCCTTGATGATCTCTTTTATCTAAATTCACTAGAAATGGATTTGGAGCAACAAAGTTCTTATCCTGTGAAAACCTTCTTAAATCATAACACACCTGAGTTCAACAGCCAAGAAATTTTATATCCAGAAAAATATAATTTGTGTAATTCTTCCTCAAAAGAAATTCAGTCCATTCATGAGGATGAAACAGGATCAATCAAATTCGAATCTGACTGTGCTGATTCTTCGTTTGCCGCTAGAATTCTTTCCGCTGAAATGCATTTGTCGGACGACGAATCATTCCATTCTTTCATCGATTCATATTCATCCATGGCTCGCCTATCAAATGCATCAAAGGCCAGCCATAGTGATGCATCAGAAATTTTAACTGAGAATGTGATAGATGTGTCTCCCAATCAATCAGAAACCACTCAAATTTTGATTTCTCAGCCACCACCACCTCCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCTGGTCTCAGTTGCGAGCTTTTCGGCTTCTCGATCTTCTCCTTATTCAATTAGAACCGGAAATAGAGCTTCATCTTCTTCCACATTGCCATATTTCTCATCACCATTGAAATTGGATTCTTCTTCGGGATCCATTCCAACCCCACGAAAGGATTTGACTTCTTCGATTAAAAAACAAGCTAAACAATCTCCACCATCCCCACCGGCTATTCCTCCACCACCCTGCCCGCCAGGAAATAATTTCTCTATCAAGACTCCACCGCCTCTCCTGTCTCAACTTCCTCATTTTAGACCACTGGGAAAAGATGGATCTCCACTTCCGAAACTCAAGCCACTTCATTGGGACAAAGTCAGAGCTACGCCTGATCGTTCAATGGTGTGGGACAAGCTGAGATCGAGCTCGTTTGAGCTAGATGAGGAAATGATAGAGTCACTTTTCGGATACAATTTACAAAATTCGGCGAAGAATGATGGTACTAAGAGCAAGAGCCCCTCTCCAAGCAAACATATACTTGAGCCGAAGAGACTCCAGAACTTAACCATACTCTTTAAAGCCTTAAATGTGACTGCAGAGCAAGTATGTGAAGCGTTAGAACAAGCAGGGAATGGCTTGAGATTAGCACAAATAGAAGCACTTGTAAAAATGGTACCAACCATGGAAGAAGAGGCAAAGCTATCGAGCTACAAAGGAAACTTCAACGATCTGGGATCTGCAGAGCGATTCGTGATAGTAGTTTTGAGAATTCCGTTCGCCTTTCAGCGGGTCGAAGCCATGCTTTACCGTGAAACTTTTGAGGACGAGGTCGTTCATCTCAGAAACTCATTTTCAATGCTAGAGGATGCTTGCAAGGAACTGAGGTCTAGCAGGCTCTTCTTGAAGTTACTCGAAGCTGTGCTTAAAACGGGAAATCGTATGAACGTTGGAACAATTAGAGGAGGCGCAAAAGCATTCAAACTAGATGCTCTCCTCAAACTGGCTGATGTGAAAGGAACAGACGGTAAAACCACTCTCCTCCATTTTGTGGTTCAAGAAATAATTCGATCTGAAGGAGTTAGAGTTTCCGAGAGCATAATGGGAAAAATCAGCCAGAAAAACAAAAGCAAAACGGCTCAAGAGAGGGAAGAATACTACAGAAAAATGGGTCTAGATCTTGTATCTGGTTTAAGCACAGAACTCTACAATGTGAAGAAAACAGCATCCATTGACATGGATGTTCTCGCTACTTCAGTTTCATATCTCTCAGAAGGAATCGCAAAGCTATTACGTCTGATACACAAGGATTTGTGCGTCGATCAAAGAAGTGAAATTTTCATAAACTCGATGAAATCTTTTATAAATTATGCAGAGAGTATTCTGAAAGAGTTGCAGGAAGATGAAAATAGAGTGCTCTTGAGAGTGAAAGATATTACCGAGTATTTCCATGGCGATTTGAGCAGAGAGGAAGGAAACCCACTTCGAATCTTTGTGATTGTGAGAGATTTTCTGGGTATGTTGGATCATGTCTGTAAAGAGTTGAGAAGTTCGAAAACTGGTCGGAGTCGGAGCCCTCTCGCTCCATTTAGATAG 2721 41.97 MGLLSNNIFIIFFIIFTPFSFQITGILIAEGQWIAGKDFHGLHLEQLDFMEENGGGNQKSKIKRVAGVDESEVKEILIVEKFRALLGFKSLYLKNPSNADSAESFSPSPSPLSAIEAPAPAPLPSLLTHNHSHPPLHHSRGAKNGHKVQTQNEDQVNVRTLVAVLVPTGAAILICALGFFWVCKKFRKQRKKSSRTISVTEKKGVRTAASNCVNPQKSDKYKVSSNHGLDDLFYLNSLEMDLEQQSSYPVKTFLNHNTPEFNSQEILYPEKYNLCNSSSKEIQSIHEDETGSIKFESDCADSSFAARILSAEMHLSDDESFHSFIDSYSSMARLSNASKASHSDASEILTENVIDVSPNQSETTQILISQPPPPPPPPPPPPPPPLVSVASFSASRSSPYSIRTGNRASSSSTLPYFSSPLKLDSSSGSIPTPRKDLTSSIKKQAKQSPPSPPAIPPPPCPPGNNFSIKTPPPLLSQLPHFRPLGKDGSPLPKLKPLHWDKVRATPDRSMVWDKLRSSSFELDEEMIESLFGYNLQNSAKNDGTKSKSPSPSKHILEPKRLQNLTILFKALNVTAEQVCEALEQAGNGLRLAQIEALVKMVPTMEEEAKLSSYKGNFNDLGSAERFVIVVLRIPFAFQRVEAMLYRETFEDEVVHLRNSFSMLEDACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGVRVSESIMGKISQKNKSKTAQEREEYYRKMGLDLVSGLSTELYNVKKTASIDMDVLATSVSYLSEGIAKLLRLIHKDLCVDQRSEIFINSMKSFINYAESILKELQEDENRVLLRVKDITEYFHGDLSREEGNPLRIFVIVRDFLGMLDHVCKELRSSKTGRSRSPLAPFR 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 14843169 14846157 - BLOR08188 Blo17g00642 73030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00642 906 MobiDBLite consensus disorder prediction 355 495 - -
Blo17g00642 906 Pfam Formin Homology 2 Domain 488 883 IPR015425 -
Blo17g00642 906 Gene3D Formin, FH2 domain 507 900 IPR042201 -
Blo17g00642 906 PANTHER FORMIN-RELATED 52 906 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Blo17g00642 906 MobiDBLite consensus disorder prediction 123 152 - -
Blo17g00642 906 MobiDBLite consensus disorder prediction 449 468 - -
Blo17g00642 906 PANTHER FORMIN-LIKE PROTEIN 52 906 - -
Blo17g00642 906 SMART it6_source 484 898 IPR015425 -
Blo17g00642 906 ProSiteProfiles Formin homology-2 (FH2) domain profile. 484 906 IPR015425 -
Blo17g00642 906 SUPERFAMILY Formin homology 2 domain (FH2 domain) 449 892 - -
Blo17g00642 906 MobiDBLite consensus disorder prediction 368 388 - -
Blo17g00642 906 MobiDBLite consensus disorder prediction 390 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00642 - - - qsu:112030660 913.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00585 Blo-Chr3:22946758 Blo17g00642 Blo-Chr17:14843169 3.91E-96 dispersed
Blo11g00885 Blo-Chr11:17412692 Blo17g00642 Blo-Chr17:14843169 4.74E-87 dispersed
Blo16g00351 Blo-Chr16:10278143 Blo17g00642 Blo-Chr17:14843169 6.17E-128 dispersed
Blo17g00642 Blo-Chr17:14843169 Blo04g01082 Blo-Chr4:16245411 3.29E-130 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01082 BCT 431 866 FH2 protein (formin) Gene Family AT3G25500 59.9 4.4e-135 479.6
Blo16g00351 BCT 424 863 FH2 protein (formin) Gene Family AT3G25500 59.5 3.5e-132 469.9
Blo17g00642 . 489 889 FH2 protein (formin) Gene Family AT3G25500 51.0 1.5e-95 348.2
Blo04g01082 BCT 435 878 FH2 protein (formin) Gene Family AT2G43800 54.5 1.0e-124 444.9
Blo16g00351 BCT 447 891 FH2 protein (formin) Gene Family AT2G43800 54.2 6.6e-124 442.2
Blo15g00519 BCT 265 551 FH2 protein (formin) Gene Family AT4G15200 56.4 3.8e-62 236.1
Blo03g00585 BCT,ECH 544 690 FH2 protein (formin) Gene Family AT4G15200 64.2 7.6e-47 185.3
Blo03g01433 BCT,ECH 372 517 FH2 protein (formin) Gene Family AT4G15200 61.9 4.9e-46 182.6
Blo15g00519 BCT 409 871 FH2 protein (formin) Gene Family AT5G54650 65.1 2.3e-164 576.6
Blo02g00105 BCT 260 857 FH2 protein (formin) Gene Family AT5G54650 52.0 1.0e-156 551.2
Blo03g01433 BCT,ECH 378 828 FH2 protein (formin) Gene Family AT5G54650 62.9 6.2e-154 542.0
Blo04g01082 BCT 26 885 FH2 protein (formin) Gene Family AT5G67470 54.4 2.4e-222 769.2
Blo16g00351 BCT 26 892 FH2 protein (formin) Gene Family AT5G67470 54.2 3.7e-207 718.8
Blo11g01006 . 486 904 FH2 protein (formin) Gene Family AT5G67470 62.1 6.2e-130 462.2
Blo11g00885 . 465 932 FH2 protein (formin) Gene Family AT1G59910 51.4 6.7e-119 425.6
Blo11g00885 . 305 932 FH2 protein (formin) Gene Family AT1G70140 50.1 2.4e-143 506.5
Blo16g00351 BCT 452 848 FH2 protein (formin) Gene Family AT3G05470 51.5 7.6e-104 375.6
Blo19g00153 . 881 1049 FH2 protein (formin) Gene Family AT1G42980 54.1 3.8e-39 159.1
Blo19g00153 . 1 1060 FH2 protein (formin) Gene Family AT1G31810 60.4 6.0e-285 977.6
Blo16g00180 BCT 126 539 FH2 protein (formin) Gene Family AT1G31810 64.7 1.1e-140 498.4
Blo16g00179 BCT 704 1083 FH2 protein (formin) Gene Family AT1G31810 52.0 1.6e-115 414.8
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT1G31810 78.7 1.1e-49 196.1
Blo04g00779 BCT 37 193 FH2 protein (formin) Gene Family AT1G31810 59.2 5.3e-39 160.6
Blo16g00180 BCT 209 530 FH2 protein (formin) Gene Family AT5G07650 74.8 7.2e-130 461.8
Blo12g01054 . 920 1224 FH2 protein (formin) Gene Family AT5G07650 61.5 4.4e-103 372.9
Blo17g00002 . 1382 1705 FH2 protein (formin) Gene Family AT5G07650 57.5 2.4e-101 367.1
Blo08g00524 . 818 1110 FH2 protein (formin) Gene Family AT5G07650 51.3 5.0e-75 279.6
Blo04g00781 BCT 1807 1981 FH2 protein (formin) Gene Family AT5G07650 78.9 1.4e-72 271.6
Blo19g00153 . 865 1049 FH2 protein (formin) Gene Family AT5G07650 60.0 2.1e-60 231.1
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07650 66.2 2.9e-46 184.1
Blo16g00180 BCT 133 523 FH2 protein (formin) Gene Family AT5G07770 67.3 1.4e-138 490.3
Blo12g01054 . 844 1217 FH2 protein (formin) Gene Family AT5G07770 54.6 1.7e-107 387.1
Blo17g00002 . 1323 1698 FH2 protein (formin) Gene Family AT5G07770 54.6 2.0e-105 380.2
Blo04g00781 BCT 1717 1981 FH2 protein (formin) Gene Family AT5G07770 64.3 2.8e-86 316.6
Blo19g00153 . 801 1049 FH2 protein (formin) Gene Family AT5G07770 56.4 4.3e-71 266.2
Blo04g00779 BCT 37 177 FH2 protein (formin) Gene Family AT5G07770 63.1 1.0e-40 165.2
Blo12g01054 . 838 1224 FH2 protein (formin) Gene Family AT3G32400 71.0 3.4e-154 542.0
Blo17g00002 . 1317 1707 FH2 protein (formin) Gene Family AT3G32400 68.5 5.1e-150 528.1
Blo16g00180 BCT 121 530 FH2 protein (formin) Gene Family AT3G32400 63.6 1.1e-139 493.8
Blo08g00524 . 755 1124 FH2 protein (formin) Gene Family AT3G32400 57.8 7.2e-112 401.4
Blo19g00153 . 780 1100 FH2 protein (formin) Gene Family AT3G32400 55.3 2.2e-92 336.7
Blo04g00781 BCT 1730 1981 FH2 protein (formin) Gene Family AT3G32400 66.1 2.4e-91 333.2
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT3G32400 63.5 1.9e-43 174.1
Blo17g00002 . 577 1707 FH2 protein (formin) Gene Family AT2G25050 57.2 0.0e+00 1086.6
Blo12g01054 . 53 1224 FH2 protein (formin) Gene Family AT2G25050 54.2 1.5e-293 1006.1
Blo16g00180 BCT 133 530 FH2 protein (formin) Gene Family AT2G25050 62.9 1.9e-139 494.2
Blo16g00179 BCT 709 1077 FH2 protein (formin) Gene Family AT2G25050 61.2 4.8e-130 463.0
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT2G25050 64.9 6.8e-44 176.8
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT2G25050 66.9 2.8e-37 154.8
Blo16g00180 BCT 134 530 FH2 protein (formin) Gene Family AT5G07780 62.3 1.5e-122 436.8
Blo12g01054 . 845 1224 FH2 protein (formin) Gene Family AT5G07780 51.5 2.6e-95 346.3
Blo17g00002 . 1324 1705 FH2 protein (formin) Gene Family AT5G07780 51.3 8.3e-94 341.3
Blo04g00781 BCT 1732 1981 FH2 protein (formin) Gene Family AT5G07780 57.9 3.4e-71 266.2
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07780 68.9 6.7e-43 172.2
Blo16g00180 BCT 100 537 FH2 protein (formin) Gene Family AT5G07740 78.8 7.2e-185 645.6
Blo16g00179 BCT 709 1367 FH2 protein (formin) Gene Family AT5G07740 54.7 2.0e-179 627.5
Blo04g00779 BCT 13 191 FH2 protein (formin) Gene Family AT5G07740 67.0 1.8e-55 215.7
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT5G07740 63.0 6.6e-37 154.1
Blo16g00180 BCT 208 537 FH2 protein (formin) Gene Family AT5G07760 72.6 1.4e-126 451.1
Blo12g01054 . 919 1224 FH2 protein (formin) Gene Family AT5G07760 61.7 3.1e-102 370.2
Blo17g00002 . 1398 1705 FH2 protein (formin) Gene Family AT5G07760 61.1 5.5e-99 359.4
Blo04g00781 BCT 1806 1981 FH2 protein (formin) Gene Family AT5G07760 77.3 6.3e-71 266.2
Blo19g00153 . 875 1049 FH2 protein (formin) Gene Family AT5G07760 62.9 1.3e-60 231.9
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07760 65.8 2.3e-44 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00642 Blo_Chr17 FPKM 17.121603 18.542791 19.924273 20.108164 14.089175 13.874792 14.823787 17.28616 16.148106 17.952581