Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00673 ATGAGTTCGCGGTTCTTAAGCCAATACCCGATAAGAACCGACACTCTCTTCCTTCACACCGACCCCCCGCCCCCCCCCCGCGAAGTTCTAGATCTGGAGCTTCTCGGCCAGATCTGGAACTTCTCGGCCAGAGAAGTTCCAGATCTGGAGCTGCTCGGCCAGATCTGGAGCTGCTCGGCCAGATCTGGAACTTCTCGGTTCTCGGAATCGAGAACCGCCGGGTCCGGACCCGGAACCGACCTCAGGTTCGGGTTCGGTTCTAGACCCAAACGGTTCCAGATCGGAGGGACTCTCAGGCGGGCAGGTATTTTTTTTAAGGGAGAATTCAACCTTTTCTTGTACATGGCGACGAGGAATAGAACTTTGCTGTTCAGAAAATATAGGGATGCTTTGAAGAGCGTTAGAGTTCCGGCGAGCTCTTTGCTGGCGTCGGGTTCACCGTCGACAAGTTCTGGCGGAGGAGGTGGTCCGGTTATCGAGTTGGTCACCACCTCGATCTTGCATCCAAATCGTTCTTATGCTCCGCTTAGTACGGAGGATCCGGGTTATTCAAGTAGGGGTGCTCTTACGGTTGGTCTACCTCCAGCTTGGGTGGATGTTTCTGAAGAAATATCAACAAATGTTCAGCGTGCACGGGTAAAAATGGCTGAGTTATCCAAGGCACATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGTTCAAAGATTAATTGAAGCTCTTACTCAAGAGATTACAGGTCTGATTAAGAAATCTGAGAAGAGACTTCAAAGACTTTCAGCAGCAGGACCTTCTGAAGATTCCAACGTCAGAAAAAATGTTCAGCGTTCTCTTGCCACAGACCTTCAAAATCTTTCAATGGAGCTTCGGAAAAAACAATCAAGTTACCTCAATCGGCTCAGGCAGCAAAAGGAGGGTCAAGATGGGATTGACTTAGAGATGAATCTGAATGGAAGTAGATCTACTACGGAGGATGATGACTTGGATAACATGGTTGTAGGATCTGTAAATGAGCTTGCTCAAATTATGAAGGATCTTTCAGTTCTTGTTATAGACCAGCAGGGCACTATTGTTGATAGGATTGACTATAACATTCAAAATGTTGCAACTACAGTTGAGGAAGGCCTTAAACAGCTTCAGAAGGCTGAAAGAACACAAAAACAAGGAGGGATGGTAATGTGCGCATCTGTGCTTCTTATCATGTGCTTCATCATGTTGGTTCTCCTGGTCCTCAAGGAAATATTTTTGTAG 1257 46.94 MSSRFLSQYPIRTDTLFLHTDPPPPPREVLDLELLGQIWNFSAREVPDLELLGQIWSCSARSGTSRFSESRTAGSGPGTDLRFGFGSRPKRFQIGGTLRRAGIFFKGEFNLFLYMATRNRTLLFRKYRDALKSVRVPASSLLASGSPSTSSGGGGGPVIELVTTSILHPNRSYAPLSTEDPGYSSRGALTVGLPPAWVDVSEEISTNVQRARVKMAELSKAHAKALMPSFGDGKEVQRLIEALTQEITGLIKKSEKRLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSSYLNRLRQQKEGQDGIDLEMNLNGSRSTTEDDDLDNMVVGSVNELAQIMKDLSVLVIDQQGTIVDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLLIMCFIMLVLLVLKEIFL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 17428536 17432407 + BLOR08219 Blo17g00673 73061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00673 418 PANTHER SYNTAXIN 115 331 IPR045242 -
Blo17g00673 418 PANTHER SYNTAXIN 334 413 IPR045242 -
Blo17g00673 418 SMART tSNARE_6 316 384 IPR000727 -
Blo17g00673 418 Gene3D - 194 335 - -
Blo17g00673 418 SUPERFAMILY t-snare proteins 193 377 IPR010989 GO:0016020|GO:0016192
Blo17g00673 418 SMART SynN_4 188 303 IPR006011 GO:0016020
Blo17g00673 418 CDD SNARE_syntaxin16 334 383 - -
Blo17g00673 418 PANTHER SYNTAXIN-43-LIKE 115 331 - -
Blo17g00673 418 Pfam SNARE domain 358 410 IPR000727 -
Blo17g00673 418 Gene3D - 336 392 - -
Blo17g00673 418 PANTHER SYNTAXIN-43-LIKE 334 413 - -
Blo17g00673 418 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 353 384 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00673 Blo-Chr17:17428536 Blo18g00633 Blo-Chr18:10785740 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00673 K08489 - jre:109011309 473.011