Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00713 ATGGAGGAAAAGGGAGCCATCAAGTCAAGATTCAGAAGAGTGTGTGTTTTCTGTGGTAGCAGTACTGGCAAGAGAAACTGCTACAGCGATGCTGCTCTCGAGCTTGGGCAAGAGCTGGTTTCGAGAAGATTGGATCTTGTTTACGGAGGAGGAAGTGTTGGTTTGATGGGTTTGGTTTCTCGGGAGGTTCACAGCGGCGGAGGAAATGTATTAGGGTATGTGCTTGATTTTGTTCTGGAAAAGGCTGAATTTATTTGCAAGAGCTGGTTTTATGTGATGAGTTTTGGTTGGTTGGAGCAGATAACTGGGGAAACAGTTGGAGAGGTGAAAGCAGTAGCAGATATGCACCAAAGGAAAGCTGAGATGGCCCGCCATTCTGATTGTTTTATTGCCCTTCCTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACAATACAATGAGTTAGGTGGGTATGGAACATTGGAAGAGTTATTAGAAGTCATCACATGGGCCCAGTTGGGAATACATGACAAGCCGGTGGGTTTGCTCAATGTGGACGGCTTCTACAACTCTCTTCTTACTTTCATTGATAAAGCTGTGGACGATGGGTTTATCACACCATCCCAGCGAGACATAATAGTCTCAGCTCCCAATGCGAAAGAACTTGTTCAGAAGCTTGAGGAATACGTGCCTCTGCAAGATGGAGTTATTGCTAAGGCCAAGTGGGAAACAGAACAGATGGAGCTGAATGCATCTTTGCATTCAGAACTCTTCCGCTAG 765 45.88 MEEKGAIKSRFRRVCVFCGSSTGKRNCYSDAALELGQELVSRRLDLVYGGGSVGLMGLVSREVHSGGGNVLGYVLDFVLEKAEFICKSWFYVMSFGWLEQITGETVGEVKAVADMHQRKAEMARHSDCFIALPGLSLSLSLSLSQQYNELGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGFYNSLLTFIDKAVDDGFITPSQRDIIVSAPNAKELVQKLEEYVPLQDGVIAKAKWETEQMELNASLHSELFR 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 20643412 20644613 - BLOR08259 Blo17g00713 73101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00713 254 Gene3D - 2 223 - -
Blo17g00713 254 SUPERFAMILY MCP/YpsA-like 10 224 - -
Blo17g00713 254 Pfam Possible lysine decarboxylase 151 221 IPR031100 -
Blo17g00713 254 Pfam Possible lysine decarboxylase 56 134 IPR031100 -
Blo17g00713 254 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 6 252 - -
Blo17g00713 254 PANTHER LOG FAMILY PROTEIN YJL055W 6 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00713 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - pvy:116112637 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00397 Blo-Chr15:5588587 Blo17g00713 Blo-Chr17:20643412 1.13E-109 dispersed
Blo17g00713 Blo-Chr17:20643412 Blo18g00781 Blo-Chr18:22474993 1.18E-91 dispersed
Blo17g00713 Blo-Chr17:20643412 Blo04g00598 Blo-Chr4:5134562 3.21E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g124 . . . . . . . . Cmo05g01011 . . . . . . . . Bhi04g01557 . . . . . . Cla08g00964 . . . . . . . . . . . . . Cme03g01358 Blo17g00713 . Bda08g01175 . . . . . . . . . Cma05g00993 Car05g00875 . . . . . . . . . . . . . . . . . Lsi08g00804 . Chy03g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00713 Blo_Chr17 FPKM 36.473923 45.971928 15.619031 14.749365 9.043777 10.129694 6.936727 38.703457 37.199299 37.50626