Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00739 ATGGGTTTCGTGAGTGCTGTACTTGGCTTCTGTGGATTTGGAGTAGGAACATCGATTGGGATTGTTGTTGGTTATTACATGTTCATCTACTTCCAGCCAACAGATGTGAAAGATCCGGTGGTTCGCCCTTTGATTGAGCATGATTCGAAAACATTGCAACAATTGATGCCGGAAATACCTTTGTGGGTCAAAAACCCTGATTTCGATCGAGTTGACTGGCTAAACAAATTTATCGAGAATATGTGGCCTTACCTCGACAAGGCAATTTGCAAGATGGTGAAGAACATAGCAAAACCTATTATTGCTGAGCAAATTCCGAAATACAAAATTGATTCGGTCGAGTTTGAAACACTTACCTTGGGCTCCTTACCTCTCACTTTTCAAGGAATGAAAGTTTATTCGACTGATGAAAAGGAACTAATTACCGAGCTATTATTGAAGTGGGCGGGAAACCCGAACATCACTATTGTCGTGAAAGCATTTGGATTGAAGGCCACCGTTCAGGTGGTTGATTTGCAAGTTTTTGCTGCTCCTCGGATAACGCTTAAGCCTTTGGTTCCCACATTTCCTTGTTTTGCAAAAATATTGGTCTCTCTAATGGAGAAGCCACATGTTGACTTTGGTCTGAAATTTCTCGGAGCTGATGTAATGTCGATTCCTGGCCTGTACAGGTTTGTCCAGCTGTTCTTCTTCTTCTTCTTCTCTGTTTCTTTCTCTCCAAAAAGTCTACTCAATTCAGTATGTATAATTGAACATGTCTTTAACATTCTCCAGGAGCTCATTAAAGATCAAGTTGCCAATATGTATCTGTGGCCTAAGACCCTTGAAGTGCCTATAATGGATCCTGCATACTTTTCATGTAACTGCAGGGCCATGAAAAAACCAGTTGGAATTCTTAATGTGAAGGTTTTGAAGGCACTGAAGCTGAAAAGGAAAGATCTTTTTGGGGCATCCGACCCGTATGTCAAGCTGAAGCTCACCGAGGACAAGCTTCTTGCAAAGAAAACGACTGTAAAACATAGTAATTTGAACCCAGAATGGAACGAGGAATTTCATTTGGTTGTTAAGGATCCGGAATCTCAAGCCTTCGAACTGATAGTTTACGATTGGGAACAGATCGGGAAACACGAGAAGATGGGTATGAATGTTGTTCCGTTGAAAGACCTTACTCCTGATGAGCCTAAAGTTTTGACTCTTGATCTGTTGAAAAACATGGATCCAAACGATCCTCAAAACGAGAAGTCGAGAGGGCAGATAATGGTCGAATTATTGTACAAACCCTTTAAAGATGATGAAATTCCAAAAGCTGAGGAAGATTCAGATACCATCCAAAAAGCTCCTGAAGGAACACCAGCTGGTGGTGGCTTGCTTGTCATCGTTATTCACGAAGCCGAAGACGTGGAAGGAAAGCACCACACCAACCCTTACGTACGCCTACTCTTCCGAGGAGAAGAAAAAAAAACAAAGCCTGTTAAGAAAAATCGGGATCCACGGTGGGATGAAGAATTTCAATTTACGCTCGATGAGCCGCCAACCAATGACAAAATTCACTTTGAAGTACTAAGTGCATCGTCGAGAATTGGGCTGCTACATCCCAAGGAATCTTTGGGTTATGTTGATATAAATCTATCGGACGTGGTCACGAACAAAAGAATTAACGGGAAGTATAATCTGATCGATTCGAAGAACGGCCGGCTTCAAATCGAGCTCCAGTGGAGAACTGCAGCATGA 1731 42.11 MGFVSAVLGFCGFGVGTSIGIVVGYYMFIYFQPTDVKDPVVRPLIEHDSKTLQQLMPEIPLWVKNPDFDRVDWLNKFIENMWPYLDKAICKMVKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPLTFQGMKVYSTDEKELITELLLKWAGNPNITIVVKAFGLKATVQVVDLQVFAAPRITLKPLVPTFPCFAKILVSLMEKPHVDFGLKFLGADVMSIPGLYRFVQLFFFFFFSVSFSPKSLLNSVCIIEHVFNILQELIKDQVANMYLWPKTLEVPIMDPAYFSCNCRAMKKPVGILNVKVLKALKLKRKDLFGASDPYVKLKLTEDKLLAKKTTVKHSNLNPEWNEEFHLVVKDPESQAFELIVYDWEQIGKHEKMGMNVVPLKDLTPDEPKVLTLDLLKNMDPNDPQNEKSRGQIMVELLYKPFKDDEIPKAEEDSDTIQKAPEGTPAGGGLLVIVIHEAEDVEGKHHTNPYVRLLFRGEEKKTKPVKKNRDPRWDEEFQFTLDEPPTNDKIHFEVLSASSRIGLLHPKESLGYVDINLSDVVTNKRINGKYNLIDSKNGRLQIELQWRTAA 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 22816172 22820308 + BLOR08285 Blo17g00739 73127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00739 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 294 429 IPR035892 -
Blo17g00739 576 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 280 IPR031468 GO:0008289
Blo17g00739 576 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 227 - -
Blo17g00739 576 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 247 574 - -
Blo17g00739 576 ProSiteProfiles C2 domain profile. 439 556 IPR000008 -
Blo17g00739 576 ProSiteProfiles C2 domain profile. 279 399 IPR000008 -
Blo17g00739 576 Gene3D C2 domain 456 574 IPR035892 -
Blo17g00739 576 PRINTS C2 domain signature 341 354 IPR000008 -
Blo17g00739 576 PRINTS C2 domain signature 314 326 IPR000008 -
Blo17g00739 576 PRINTS C2 domain signature 363 371 IPR000008 -
Blo17g00739 576 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 224 IPR039010 -
Blo17g00739 576 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 227 IPR045050 GO:0008289
Blo17g00739 576 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 247 574 IPR045050 GO:0008289
Blo17g00739 576 CDD C2 457 558 - -
Blo17g00739 576 Gene3D C2 domain 292 449 IPR035892 -
Blo17g00739 576 SMART C2_3c 456 555 IPR000008 -
Blo17g00739 576 SMART C2_3c 298 398 IPR000008 -
Blo17g00739 576 CDD C2 299 401 - -
Blo17g00739 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 455 573 IPR035892 -
Blo17g00739 576 Pfam C2 domain 456 558 IPR000008 -
Blo17g00739 576 Pfam C2 domain 297 396 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00739 - - - vvi:100260940 925.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00320 Blo-Chr4:2550557 Blo17g00739 Blo-Chr17:22816172 1.12E-176 dispersed
Blo13g00717 Blo-Chr13:30030550 Blo17g00739 Blo-Chr17:22816172 0 dispersed
Blo16g00888 Blo-Chr16:36543367 Blo17g00739 Blo-Chr17:22816172 1.92E-55 dispersed
Blo02g00680 Blo-Chr2:19117811 Blo17g00739 Blo-Chr17:22816172 0 transposed
Blo17g00739 Blo-Chr17:22816172 Blo04g00565 Blo-Chr4:4858594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00739 Blo_Chr17 FPKM 4.962963 3.253057 2.268534 4.330703 9.475124 8.233608 7.027223 5.869703 5.65029 2.94082