Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00751 ATGGACGAAAGAAGCCATCGCGAAATTGGAAGGCACAAAGCAGATCATTATAAGGCAGCTCAAAGCCAGTGGTTGATGCATCCCCAGCCGTCAATGAAACAGATAATGGCTATTGTAGCTGAAAGAGATGCAGCCATTCAGGAGCGAAATTTGGCCCTGTCTGAGAAAAAGGCAGCTCTTGCCGAGCGAGATATGGCAATCCTGCAACGGGATACAGCAATTGCAGAAAGAAATAATGCATTATTGGAAAGAGACAATGCTATTGCAACTCTTCAATTCCGTGAAAACTCCTTAAGCAGTGGTAGTATGTCATGTCCACCAGGTTGCCAAATCTCACGAGGAGTCAAGCATATGCATCATCCACAGCAACATTCACATAATGTTCCTCACATGCATGAAGGTCCTTACAGTAATAGGGAAACGCACCCAATTGATTCTGTCCCTGTTTCACCAGTACCTTCAGAAGCCACAAAGACAAAGCGGATCAAACGGACTAGGGAAACAAAAGCAGTATCAGGTAATAAGAAAGCTTCAAAACCTTCAAGAAAGACTAAGAGGGAAGGTGGGGACTTGAATAAGGATATGTTTGGTGAACCGCATGAGTGGAAGAATGGACATTACATGGGTGGTGGAGGCGACGATCTTAACAAACAATTTGTGGCCTCAAAGTCTGATTGGAAGGTTCAGGACCTTGGTTTGAACCAGGTTGCTTTCGATGAATCAACCATGCCAGCACCAATTTGCTCTTGTACTACAACACCTAGACAGTGCTACAAATGGGGAAATGGTGGGTGGCAATCTGCATGTTGTACAACCACCATGTCAATGTATCCTCTACCAGCCGTGCCAAACAAACGGCATGCCCGTGTGGGTGGTAGAAAGATGAGTGGAAGTGCTTTTAACAAGCTTCTTAGCCGGCTTGCCGCAGAAGGCCAAGATCTCTCGGCCCCAGTTGATCTTCATAATCATTGGGCCAAGCATGGAACAAATCGCTACATCACAATAAAGTAG 1011 45.5 MDERSHREIGRHKADHYKAAQSQWLMHPQPSMKQIMAIVAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAERNNALLERDNAIATLQFRENSLSSGSMSCPPGCQISRGVKHMHHPQQHSHNVPHMHEGPYSNRETHPIDSVPVSPVPSEATKTKRIKRTRETKAVSGNKKASKPSRKTKREGGDLNKDMFGEPHEWKNGHYMGGGGDDLNKQFVASKSDWKVQDLGLNQVAFDESTMPAPICSCTTTPRQCYKWGNGGWQSACCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGQDLSAPVDLHNHWAKHGTNRYITIK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 23579358 23580492 - BLOR08297 Blo17g00751 73139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00751 336 Pfam GAGA binding protein-like family 1 336 IPR010409 -
Blo17g00751 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 204 - -
Blo17g00751 336 PANTHER - 212 336 IPR010409 -
Blo17g00751 336 PANTHER - 1 204 IPR010409 -
Blo17g00751 336 Coils Coil 51 85 - -
Blo17g00751 336 MobiDBLite consensus disorder prediction 116 201 - -
Blo17g00751 336 MobiDBLite consensus disorder prediction 183 201 - -
Blo17g00751 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 336 - -
Blo17g00751 336 MobiDBLite consensus disorder prediction 157 173 - -
Blo17g00751 336 SMART GAGA_bind_2 1 336 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00751 - - - jre:108983830 530.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00996 Blo-Chr6:33206745 Blo17g00751 Blo-Chr17:23579358 3.30E-43 dispersed
Blo11g00754 Blo-Chr11:10236397 Blo17g00751 Blo-Chr17:23579358 1.04E-41 dispersed
Blo13g00531 Blo-Chr13:27086332 Blo17g00751 Blo-Chr17:23579358 4.56E-112 wgd
Blo17g00751 Blo-Chr17:23579358 Blo18g00782 Blo-Chr18:22560307 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00996 . 1 280 BBR/BPC Transcription factor family AT2G01930 53.0 3.0e-78 288.9
Blo11g00754 . 2 274 BBR/BPC Transcription factor family AT2G01930 55.3 1.8e-75 279.6
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT2G01930 54.5 2.2e-73 272.7
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT1G68120 51.2 2.9e-67 252.3
Blo18g00782 . 616 725 BBR/BPC Transcription factor family AT1G68120 55.5 5.4e-37 151.8
Blo13g00531 . 102 269 BBR/BPC Transcription factor family AT2G21240 67.5 1.3e-63 240.4
Blo17g00751 . 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 1.9e-59 226.5
Blo13g00531 . 1 269 BBR/BPC Transcription factor family AT4G38910 59.9 1.7e-57 219.9
Blo17g00751 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.9 2.0e-74 276.2
Blo18g00782 . 477 725 BBR/BPC Transcription factor family AT5G42520 55.8 1.6e-71 266.5
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13538 PF06217 GAGA_bind 2.00E-101 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00751 Blo_Chr17 FPKM 0.584403 0.471425 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0