Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00753 ATGGGAGCTGCGTACGGAACGGCGAAAAGTGGGGTTGGGGTGGCATCGATGGGTGTGATGAGGCCCGAGCTGGTGATGAAATCGATTGTGCCTGTTGTTATGGCCGGAGTTTTGGGGATCTACGGTCTGATTATTGCTGTGATTATTAGCACAGGGATTAACCCCAAGGCCAAATCCTATTACCTTTTTGATGGCTATGCCCATCTGTCCTCTGGTCTTGCTTGTGGCCTCGCTGGTCTCTCTGCAGGCATGGCAATTGGAATTGTCGGAGATGCCGGTGTTAGGTATCATATCTTACTTTTTGTGAGGTTTCTTTTCCCTAATTTGAGAGCCAATGCGCAGCAACCAAAGCTGTTTGTTGGGATGATTCTCATTCTCATCTTCGCTGAAGCACTTGCCCTGTATGGCCTCATTGTTGGCATTATTCTCTCTTCACGAGCAGTAGTAACTCTTGTCAATGGTGTTGAGGCTTGTTTCATTTTCCTGGTTTTGGGCTTGGTCTACCATAGCATTCCCCAGACTACTACAGCGGTCTACTGCAACGAAGATCCGGGCGACAACAACAATGCTTCTCAAATAAGCATTCACGACTGGGCCACCGCAACTCAACTCCAAGCTGCCGCAGAAGACTTGTTTTAG 639 48.51 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYHILLFVRFLFPNLRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAVVTLVNGVEACFIFLVLGLVYHSIPQTTTAVYCNEDPGDNNNASQISIHDWATATQLQAAAEDLF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 23845470 23847889 + BLOR08299 Blo17g00753 73141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00753 212 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 1 94 IPR011555 GO:0033179|GO:0046961|GO:1902600
Blo17g00753 212 Pfam ATP synthase subunit C 70 143 IPR002379 GO:0015078|GO:0033177|GO:1902600
Blo17g00753 212 Pfam ATP synthase subunit C 1 49 IPR002379 GO:0015078|GO:0033177|GO:1902600
Blo17g00753 212 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 147 - -
Blo17g00753 212 CDD ATP-synt_Vo_c_ATP6C_rpt2 62 144 - -
Blo17g00753 212 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 1 147 - -
Blo17g00753 212 SUPERFAMILY F1F0 ATP synthase subunit C 60 144 IPR035921 -
Blo17g00753 212 CDD ATP-synt_Vo_c_ATP6C_rpt1 1 53 - -
Blo17g00753 212 PRINTS Vacuolar ATP synthase 16kDa subunit signature 80 106 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo17g00753 212 PRINTS Vacuolar ATP synthase 16kDa subunit signature 3 27 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo17g00753 212 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo17g00753 212 Gene3D - 1 150 IPR035921 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo17g00753 Blo18g00785 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00650 Blo-Chr2:15808163 Blo17g00753 Blo-Chr17:23845470 8.61E-83 dispersed
Blo15g00664 Blo-Chr15:19363022 Blo17g00753 Blo-Chr17:23845470 1.89E-59 dispersed
Blo17g00753 Blo-Chr17:23845470 Blo18g00785 Blo-Chr18:22701057 3.50E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00753 K02155 - psom:113349779 219.55