Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00766 ATGGAGCGAGTAGTAATCCTTGCTCTTCTTCTCGTTTATCTGGTATCAGTAACCGCTGTCGCTTCCTCCATAGATTCCGATAACGTTACTGATGAAGGAGATTCTCTGATTCGCCAGGTTGTATTCGAAGGCGAGGATCAATTCTTGACCTATGAGCGCCACTTTGCGAACTTCAAAGTGAAGTTCGGGAAGAATTACGCCACTCAAGAAGAGCATGATTACAGGTTCTTAATATTCAGGAAGAATCTCCTACGAGCGAGGCGCCACCAGAAGCTCGATCCTGACGCTGTCCATGGCGTCACTAAGTTCTCCGATCTTACTGCCGCCGAGTTTGGTCAGCAGTACCTTGGCCTCAAGCGTCTACGACTCCCTGTTGATGCTCACAAGGCTCCCATCCTCCCTACTAATGACCTCCCTTCCGATTTTGATTGGCGCGACCTCGGCGCCGTCACTGCAGTCAAAGATCAGGTATTGTTTGGGATTGCTAGGGTTCTTGTGGATCTTGCTGGTCGTTTAGTGCGGCTGGAGCATTGGAAGGAGCTCATTTTTTGTCGACTGGAGACCTTATCCGCTGTCGCGCGTTCTCTGTGTGATCCAGAAGAAAGTGGTGCTTGTGACGCGGGATGTAACGGAGGCCTGATGACCACTGCCTTCGAATACATACATAAGGTGGGCGGATTAGAGAAGGAAAAAGACTATCCATACACCGGGACTGACAGAGGAACTTGTAAATTTGACAAGATTAAGGCCGTCGCCTCTGTATCCAACTTCAGCGTTGTTTCCATAGATGAAGATCAAATTGCAGCAAATTTGGTGAAGAACGGCCCTCTAGCAGTTGGAATCAATGCAGTTTTCATGCAGACATACATGAAAGGTGTTTCTTGCCCATACATATGCTCAAAGAATCTTTTAGATCATGGGGTACTTCTTGTAGGATTTGGCTCTGCTGGTTATGCACCCATAAGGTTTAAAGACAAGGCTTACTGGATCATTAAGAACTCGTGGGGAGAGGATTGGGGAGAAAATGGCTACTACAAAATCTGTAGGGGTAAGAATATATGTGGGGTGGACTCCATGGTGTCAACAGTTGCTGCTTCTACTCGGTTTCTGGGTTTGTCCTCCAGCGGAGTCATTGATTCTTGGGGTTCTGTCGTGTTTCCGGTCGATCTTTCAAATTTTGTTGCAACTGCGATGTTTTGTCTTTGTAATGTTGTTCCATTTTAG 1224 46.98 MERVVILALLLVYLVSVTAVASSIDSDNVTDEGDSLIRQVVFEGEDQFLTYERHFANFKVKFGKNYATQEEHDYRFLIFRKNLLRARRHQKLDPDAVHGVTKFSDLTAAEFGQQYLGLKRLRLPVDAHKAPILPTNDLPSDFDWRDLGAVTAVKDQVLFGIARVLVDLAGRLVRLEHWKELIFCRLETLSAVARSLCDPEESGACDAGCNGGLMTTAFEYIHKVGGLEKEKDYPYTGTDRGTCKFDKIKAVASVSNFSVVSIDEDQIAANLVKNGPLAVGINAVFMQTYMKGVSCPYICSKNLLDHGVLLVGFGSAGYAPIRFKDKAYWIIKNSWGEDWGENGYYKICRGKNICGVDSMVSTVAASTRFLGLSSSGVIDSWGSVVFPVDLSNFVATAMFCLCNVVPF 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 24411922 24415541 - BLOR08312 Blo17g00766 73154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00766 407 Gene3D Cysteine proteinases 30 364 - -
Blo17g00766 407 Pfam Cathepsin propeptide inhibitor domain (I29) 55 111 IPR013201 -
Blo17g00766 407 SMART pept_c1 138 364 IPR000668 GO:0006508|GO:0008234
Blo17g00766 407 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 328 347 IPR025661 -
Blo17g00766 407 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 304 314 IPR025660 -
Blo17g00766 407 PANTHER CYSTEINE PROTEASE RD19C-RELATED 27 365 - -
Blo17g00766 407 SMART Inhibitor_I29_2 55 111 IPR013201 -
Blo17g00766 407 Pfam Papain family cysteine protease 138 362 IPR000668 GO:0006508|GO:0008234
Blo17g00766 407 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 365 - -
Blo17g00766 407 CDD Peptidase_C1A 139 363 IPR039417 -
Blo17g00766 407 SUPERFAMILY Cysteine proteinases 51 362 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00766 K01373 CTSF; cathepsin F [EC:3.4.22.41] - jre:109008275 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00677 Blo-Chr15:20567146 Blo17g00766 Blo-Chr17:24411922 1.23E-161 dispersed
Blo17g00766 Blo-Chr17:24411922 Blo16g00242 Blo-Chr16:5606060 1.42E-41 dispersed
Blo13g00541 Blo-Chr13:27269893 Blo17g00766 Blo-Chr17:24411922 1.42E-151 wgd
Blo17g00766 Blo-Chr17:24411922 Blo04g00528 Blo-Chr4:4542691 4.02E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00766 Blo_Chr17 FPKM 0.89548 0.877439 90.869255 84.147087 0.0 1.103622 0.0 8.502654 9.609007 8.627481