Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00770 ATGTCTCCTGAGCAACACTGTCCGGCTTGGTGCCTCGTCAACATCCCTTATTCTTCATTTTTGAGGCATTCTAGGACGTCTCTTAATGGTGGTGGCATAATTGGATCAAGATCTGTCACAAGAGGCTACATGATTTGTCCACTGATTAGTTGGACAAAGTGGGAGTACATCGTCATGATGCAGGCGTTGAGGGACTCGCTCAAGTTGTTCAGGCTTATGTCGCACTTTGGGATGAAGTTGAAGGCATATTTGGCCCAGAATCTCGCATCTATTCCCCGCAGATATGAGTGGGCTATCAGTGACTTTCCTGTCCATGGTATTTATCGTATCAGAAGGTTCTCTGAAAACCATAGCTTCAACGCAATCAAATGTAGACTTGCAAAGCCCAAGGAGTCTCCTTCAAAAGCTGCTACAATTACAAAGGAACCTCACAAGTTTTTTGATCAGGCAATAATCACAGTTCGGTCAGGAGACGGAGGCCATGGGACAATTCTCAGTTTGCCTAACCAACAATCGAGTAAGTCACATGTTAAACATGCCAGCGAGAAGACAAAGAGAAAGAGCTCGTACAAAAGGGATTTTGATGGGTCGCTGATTCTTCCAAGTGGTGGGCGTGGTGGAGACGTTGTAATCTATGCAGACGAGGGGAAAGATTCATTGCTGGAGTTTCATACAAAAAGTCGTCATAATGCAAAACGTGGTGGAAATGTTGATGCAATGGGTGTCTTGACTTCACAATTACATGACGGATTTAATGGTCCAACCCTTCGTATTCCTGTACCTTTAGGTACTGTTGTAAGACTAAAAAAGGGGAAATTATTGGCCGATCTAGAGCATCCAGGTGACGAAGTTGTTGTTGCCAGAGGAGGACAAGGAGGGACTAGCCTGGTTGAAATGCCTGAGCATAGAAGGAAAAAGTTGATGGCTTTAACTGCAAATGTGATGAGGGATGAAAGTGACAAGGTTTTAGTTATTGGTCAACCGGGGGAAGAAGTCAGTTTGGAGTTGATTCTCCGAGTTGTTGCTGATGTTGGTCTAGTTGGACTTCCAAATGCTGGGAAATCAACTCTTTTGGCAGCTATTACAAAAGCAAAACCTGATATTGCTGATTATCCTTTCACGACGTTAATGCCAAACCTTGGTCGCCTTGATGGGGATCCTACTCTTGGGGCTGGGATGTATTTATCAGAAGCAACATTAGCAGATTTGCCTGGCCTTATTGAAGGTGCTCACTTGGGAAAGGGTCTTGGTCGAAATTTCTTAAGGCACTTGAGAAGGACTCGACTCTTAGTCCACGTTGTTGATGCTGCTGTTGGGAACCCCATAGAAGATTACAGAACTGTCAAAGAAGAGTTACGGATGTACAATCCTAATTACCTTGAACGACCATATATCGTGGTGTTAAACAAGATCGACCTTCCTGAGGCAAGAGATAGACTTCCATTTTTGATAGGGGAAATAGCAAGAATTGGAAGTGATACAGTAGCTTCTAAGATAGAAATGAACTTCAAGGATACTGATCAAATGTCACCATCAAAAGGTGGTCATTCAGATGTTGAAATAAAGAATAAAAACATTGAGGACTATCCCCGCCCACTTTCTGTTGCAGGCATCAGCGTTCTGAAAGGTATGGGGGTGAATGAGATGCTGAAGGATATAAGAGCAGCCTTAAGGAAGTGCAGGGATTAA 1689 43.64 MSPEQHCPAWCLVNIPYSSFLRHSRTSLNGGGIIGSRSVTRGYMICPLISWTKWEYIVMMQALRDSLKLFRLMSHFGMKLKAYLAQNLASIPRRYEWAISDFPVHGIYRIRRFSENHSFNAIKCRLAKPKESPSKAATITKEPHKFFDQAIITVRSGDGGHGTILSLPNQQSSKSHVKHASEKTKRKSSYKRDFDGSLILPSGGRGGDVVIYADEGKDSLLEFHTKSRHNAKRGGNVDAMGVLTSQLHDGFNGPTLRIPVPLGTVVRLKKGKLLADLEHPGDEVVVARGGQGGTSLVEMPEHRRKKLMALTANVMRDESDKVLVIGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITKAKPDIADYPFTTLMPNLGRLDGDPTLGAGMYLSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAVGNPIEDYRTVKEELRMYNPNYLERPYIVVLNKIDLPEARDRLPFLIGEIARIGSDTVASKIEMNFKDTDQMSPSKGGHSDVEIKNKNIEDYPRPLSVAGISVLKGMGVNEMLKDIRAALRKCRD 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 24554226 24562970 - BLOR08316 Blo17g00770 73158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00770 562 CDD Obg 342 480 IPR031167 GO:0005525
Blo17g00770 562 ProSiteProfiles Obg domain profile. 144 341 IPR006169 -
Blo17g00770 562 ProSitePatterns GTP1/OBG family signature. 402 415 IPR006074 GO:0005525
Blo17g00770 562 Coils Coil 546 562 - -
Blo17g00770 562 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 119 562 - -
Blo17g00770 562 SUPERFAMILY Obg GTP-binding protein N-terminal domain 145 306 IPR036726 -
Blo17g00770 562 PRINTS GTP1/OBG GTP-binding protein family signature 417 435 IPR006073 GO:0005525
Blo17g00770 562 PRINTS GTP1/OBG GTP-binding protein family signature 344 364 IPR006073 GO:0005525
Blo17g00770 562 PRINTS GTP1/OBG GTP-binding protein family signature 365 383 IPR006073 GO:0005525
Blo17g00770 562 PRINTS GTP1/OBG GTP-binding protein family signature 400 415 IPR006073 GO:0005525
Blo17g00770 562 TIGRFAM small_GTP: small GTP-binding protein domain 343 492 IPR005225 GO:0005525
Blo17g00770 562 Gene3D GTP1/OBG domain 145 340 IPR036726 -
Blo17g00770 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 557 IPR027417 -
Blo17g00770 562 Pfam GTP1/OBG 202 339 IPR006169 -
Blo17g00770 562 MobiDBLite consensus disorder prediction 167 189 - -
Blo17g00770 562 Gene3D - 341 562 IPR027417 -
Blo17g00770 562 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 342 558 IPR031167 GO:0005525
Blo17g00770 562 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 119 562 IPR045086 GO:0003924|GO:0005525
Blo17g00770 562 Pfam 50S ribosome-binding GTPase 343 470 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00770 - - - jre:108991389 678.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00518 Blo-Chr2:8486074 Blo17g00770 Blo-Chr17:24554226 1.59E-50 dispersed
Blo03g01126 Blo-Chr3:37724671 Blo17g00770 Blo-Chr17:24554226 1.24E-31 dispersed
Blo11g00208 Blo-Chr11:1683985 Blo17g00770 Blo-Chr17:24554226 8.33E-14 dispersed
Blo16g00498 Blo-Chr16:19830303 Blo17g00770 Blo-Chr17:24554226 3.81E-11 dispersed
Blo17g00770 Blo-Chr17:24554226 Blo07g00786 Blo-Chr7:25336064 8.79E-10 dispersed
Blo17g00770 Blo-Chr17:24554226 Blo03g00778 Blo-Chr3:32448139 3.09E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00466 . Blo17g00770 . Bda08g01253 . . . . . . . . . . . . . . . . . . . . . Cla05g01905 Cam05g2042 Cec05g2050 Cco05g2105 Clacu05g2034 Cmu05g1913 Cre05g2035 . . . Cme04g00509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00770 Blo_Chr17 FPKM 0.0 0.0 0.0 0.0 0.704374 0.518199 0.902355 0.0 0.192559 0.262105