Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00795 ATGTCCCAAAGGTTTATCCACTCAACCCCAGAAACTACACAGAGCTACTCTGCTACTAGCGCAAAGCCTGATTTTGACGAAGCGGAGGAGGAAGACGAAACTATGAACGAGTTTTTGTCTCGATTTGTTTGGATAATGCGTAAGAAGGTTTTGGAAGAGTTCCAATGCGACGAGCAAACAATTGATAGTATGCTGTTAATTATAGTTGAGAAAGTGGTTTCAGAAATGGAGAAGGGTAGTATAGAACAGATGCTTGGAACACCCATGGCTTCTCCATCTCAAGATTTTAGTGAGGATTTGTGGAAGATAGTGTGGGAAGTCAGCAACATGGTTTTGGCTGATATGAAAAAGGCTAATAAGAAGGAAAAATTGAAGAAGTTTACGCTATCTGAGGATGTTCAAGAAATGTGTAGGTTTGCAGGGGAAGTTGGTATTCGAGGAGATCTTCTTAAAGAGCTCAGGTTCAAATGGGCTCGGGAGAAAATGGACGAGAGTGAGTTTTATGAGAGTTTAGAGCGACTAAGAGAGCAGGCAGCTCAAGAAGAGGTCGAAGAAACAGGCGAGGAAAGAACAACTGTGCCTGGCGAGGTTGCTGGAGCTGAAGAAAAATCAAAGGTTGTGTCTCTTCCTAAGAGAAAAGGGAAGATTAGGTACAAAATTTATGGTCTTGATCTATCCCAGCCTAAGTGGACGGAAGTTATGAAAAATATCCAAGAGTCAGGTGAAGTTCTGTGGCCTCAGGAGCCAAAATCAATTTCTGGGAAATGCAAACTGGTTACTGAAAGAATTTTTTCATTGAGTCAGGAGGATGATCCATCGCCTTATCTGGTTGAATGGATAGAGCTTCTTCAACCGACAAGGGTTGACTGGATAGCTTTGCTTGATAGATTGAAGGAGAAGAACATGAGTTTATATTTGAAGGTTGTGGAACTTGTATTGAACGAAGAGTCTTTCAATACCAATACTTGTGATTACTCAAAGCTCATCAGTATTCATGCCAATGAAAACCGGCTTGAGGATGCTGAAAGAATTCTTAAGAAGATGAATGAAAAGGGCATTATGCCGGATATATTAACCGTCACTGTTTTATTGCAAATGTATTGCAAGGCAGGCTATTTGGACCATGCGAAGGAAGCATTGGAGAGCTTGAGGAGCCAAGGTTTCCAACCAGATGAGAAGGTTTACTACTCAATGATAATGGCATATGTTAATGCTGGGCAAGCTAAGTCGGGTGAATTGTTGATGAGAGAAATGGAGGCATGGGACATTAAACCAACACCTGAAATTTACATGGCATTGCTTAGATCATTTTCGCAAAGTGGTGATGTTGGTGGGGCTTTAAGAATCACCACCGTTATGCAGTATGCTGGGATCGAGCCGACTCTGGAGTCATGTACTTTACTTGTTGAGGCATATGCACAAGTTGGTGATCCTGCTAAAGCAAGAAACAACTTTGACTACATGATAAAAATTGGACATAAGCCCGATGATAGGATTACTGCAAGTATGATTGCGGCATATGAGAAGAATAATCTATTGGATGCGGCACTAAATCTTTTGCTGCAGCTGGAAAAGGATGGCTTTGAGCCTGGGGTTGCAACTTACAGTGTTCTAGTAGATTGGCTAGGTAAAATGCAATTGGTGGATGAGGCTGAGCAACTACTTGGCAAGATAGCCGAGCTGGGTGAGGCTCCTCCACTTGAGCTCCAAGTAAGCCTTTTTGATATGTACTTGAAGGCTGGAAATGAGAAAAAAACTCTTAAAGCTCTAGGGATTCTTGAATCTAAGAAGGAGCAATTGAAGGCTGATAGTTTTGAGAGGATTATAAAAGGCCTCATAGGTGGTGGACTTTTCAAGGATGCTCAAAGGATGTATCAATTTATGGAAGCACAAGGTTATATCCCCTCTAAAACCATTACGATGGCCTTGAAGGGACCTCGCATTCCCTTAATGGAATCTCAAGCCTTCGGTAGCAGGAGATCTTCATTTAGATAA 1995 41.85 MSQRFIHSTPETTQSYSATSAKPDFDEAEEEDETMNEFLSRFVWIMRKKVLEEFQCDEQTIDSMLLIIVEKVVSEMEKGSIEQMLGTPMASPSQDFSEDLWKIVWEVSNMVLADMKKANKKEKLKKFTLSEDVQEMCRFAGEVGIRGDLLKELRFKWAREKMDESEFYESLERLREQAAQEEVEETGEERTTVPGEVAGAEEKSKVVSLPKRKGKIRYKIYGLDLSQPKWTEVMKNIQESGEVLWPQEPKSISGKCKLVTERIFSLSQEDDPSPYLVEWIELLQPTRVDWIALLDRLKEKNMSLYLKVVELVLNEESFNTNTCDYSKLISIHANENRLEDAERILKKMNEKGIMPDILTVTVLLQMYCKAGYLDHAKEALESLRSQGFQPDEKVYYSMIMAYVNAGQAKSGELLMREMEAWDIKPTPEIYMALLRSFSQSGDVGGALRITTVMQYAGIEPTLESCTLLVEAYAQVGDPAKARNNFDYMIKIGHKPDDRITASMIAAYEKNNLLDAALNLLLQLEKDGFEPGVATYSVLVDWLGKMQLVDEAEQLLGKIAELGEAPPLELQVSLFDMYLKAGNEKKTLKALGILESKKEQLKADSFERIIKGLIGGGLFKDAQRMYQFMEAQGYIPSKTITMALKGPRIPLMESQAFGSRRSSFR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 25524187 25526574 - BLOR08341 Blo17g00795 73183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00795 664 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 2 646 - -
Blo17g00795 664 MobiDBLite consensus disorder prediction 1 30 - -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Blo17g00795 664 Coils Coil 331 351 - -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Blo17g00795 664 Pfam Pentacotripeptide-repeat region of PRORP 380 480 IPR033443 -
Blo17g00795 664 Pfam PPR repeat family 321 369 IPR002885 -
Blo17g00795 664 Coils Coil 171 191 - -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Blo17g00795 664 Gene3D Tetratricopeptide repeat domain 410 646 IPR011990 GO:0005515
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Blo17g00795 664 MobiDBLite consensus disorder prediction 1 21 - -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Blo17g00795 664 PANTHER OS07G0661900 PROTEIN 2 646 IPR044657 -
Blo17g00795 664 Pfam PPR repeat 502 528 IPR002885 -
Blo17g00795 664 Pfam PPR repeat 534 562 IPR002885 -
Blo17g00795 664 Gene3D Tetratricopeptide repeat domain 279 409 IPR011990 GO:0005515
Blo17g00795 664 TIGRFAM PPR: pentatricopeptide repeat domain 394 426 IPR002885 -
Blo17g00795 664 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Blo17g00795 664 TIGRFAM PPR: pentatricopeptide repeat domain 325 356 IPR002885 -
Blo17g00795 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00795 - - - jre:108991722 865.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00315 Blo-Chr12:18540742 Blo17g00795 Blo-Chr17:25524187 5.97E-62 dispersed
Blo17g00795 Blo-Chr17:25524187 Blo04g00629 Blo-Chr4:5514311 8.72E-06 dispersed
Blo17g00795 Blo-Chr17:25524187 Blo17g00710 Blo-Chr17:20191155 2.38E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010753 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00795 Blo_Chr17 FPKM 48.158257 56.174953 32.233898 31.949129 41.070286 34.914696 39.694668 16.897987 17.291658 17.385626