Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00814 ATGGCGCTACGTAGGAGGACGATATCAAAGCGATTTTTCGACTGTTACAGAGTGTCATCACCATCAGTTAAAGTAAAACAACCTTCAACAAACGATTTCAATTTGAACTTCCGCCGGCAATATTTCACCGCTCCGGCGTCAGCGGATAAAAGCTTTTTCCGGCGGTTCCTCCAACGCAGAGCTATATACCAATCGCCAGTTAATATCCCAGAATTCCTTTCACTTCCTGTTGGAGACGAGCTCGTAAAAAAGCTCCGACGTATCAACATTACCGGCGACCGTCTCCACCTCAACGGACTCAAGCCTCCTGAGGCCTCAACGGCGGACATAACCCTTCAGGCAGAGATCTCCGTCGACGAAATAAGAAAGGTTTTTAGGCTTTCTCAAATGGAGAAGCTGAAATCGAAGCTAAAGGATGTAGGGAAGAGCTCAGTTTCATACTCCGATTTCGTAAAACTTTGCGCCGACGGCTGCGTGAATGAGCACGAAGGTGCTGAGTTTGCCAAGATGTTAGATGATTCAGGAAACGTCATCGTTTTAGGAAACGTCGTCTTTCTTCGTCCTGAACAGGTGGCAAGATCAGTGGGGTCCATCATACGTGATTCAACGGCTTTGCCAAACGACCCAAGAGTGGAAGAGCTTGAAGAAATGGAAAAGCGAAAGAGCGCCATTGATGACAGAGCCAAAGCTCTGGTTAAGGGAGAGATGTACTGCGGCCTAGGATTTCTGGTGGTTCAGACCCTCTGCTTCATGAGGCTAACTTTTTGGGAGCTTAGCTGGGACGTAATGGAGCCCATATGCTTCTTCGTCGCCTCCCTTAACTGCGCTCTCGGCTATGGTTTTTTCCTCAAAACCTCCGTCGAACCCTCCTTTGAAGGCTATTTTCGTCGCAGATTCAAGGCCAAGCAGAAGAAGCTAATGGAGTTTTATGGATTTGATGTTGTTAGGTACAGTGAGCTTCGAAAAGTCTGCGGCCTTCCTGGCGGTGTAAACGACGGAGATCCTCATCTTTGA 1014 47.93 MALRRRTISKRFFDCYRVSSPSVKVKQPSTNDFNLNFRRQYFTAPASADKSFFRRFLQRRAIYQSPVNIPEFLSLPVGDELVKKLRRINITGDRLHLNGLKPPEASTADITLQAEISVDEIRKVFRLSQMEKLKSKLKDVGKSSVSYSDFVKLCADGCVNEHEGAEFAKMLDDSGNVIVLGNVVFLRPEQVARSVGSIIRDSTALPNDPRVEELEEMEKRKSAIDDRAKALVKGEMYCGLGFLVVQTLCFMRLTFWELSWDVMEPICFFVASLNCALGYGFFLKTSVEPSFEGYFRRRFKAKQKKLMEFYGFDVVRYSELRKVCGLPGGVNDGDPHL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 26292687 26294080 + BLOR08360 Blo17g00814 73202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00814 337 Pfam Mitochondrial calcium uniporter 162 320 IPR006769 -
Blo17g00814 337 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 1 324 IPR039055 GO:0051560
Blo17g00814 337 PANTHER CALCIUM UNIPORTER PROTEIN 4, MITOCHONDRIAL 1 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00814 K20858 MCU; calcium uniporter protein, mitochondrial - qsu:112011993 396.741
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00913 Blo17g00814 CCT
Blo12g00913 Blo17g00814 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g01013 Blo-Chr13:32466622 Blo17g00814 Blo-Chr17:26292687 3.11E-43 dispersed
Blo14g00047 Blo-Chr14:294325 Blo17g00814 Blo-Chr17:26292687 1.80E-42 dispersed
Blo05g00584 Blo-Chr5:14254987 Blo17g00814 Blo-Chr17:26292687 2.31E-86 transposed
Blo16g00491 Blo-Chr16:19569722 Blo17g00814 Blo-Chr17:26292687 3.26E-27 transposed
Blo12g00913 Blo-Chr12:27320350 Blo17g00814 Blo-Chr17:26292687 6.12E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g891 . Blo12g00913 . . . . Bma04g00199 . . . Cma01g01888 Cma09g00174 Car01g01472 . . Cpe06g00124 . . . . . . . . . . . . . . . . Cone7ag1802 Cone17ag1321 Cone20ag0155 Lsi04g01639 Csa03g04182 Chy04g00535 . Blo17g00814 . Bda08g01299 . . . . . . Cmo01g01951 Cmo09g00171 . . . Car09g00156 . Cpe02g00144 . . . . . . . Cla05g01963 Cam05g2113 Cec05g2124 Cco05g2177 Clacu05g2102 Cmu05g1978 Cre05g2097 . . . Cme04g00615
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007938 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00814 Blo_Chr17 FPKM 1.656716 3.342448 3.968226 4.925747 2.404175 2.329813 0.0 5.15547 4.820733 4.363464