Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00826 ATGTTTCCGGAATCAAACGGTGCTGCGAGGTCGAAATTTGGCGCTGTTTTGCACTCTGATCCGAATTTTTCATCAACCGGAAACGACGGCGAGTTTCCGGCGATGCATCACGGCGGCGCTTCTGATCCTGGCAATGCCTTTCACGAGCCTAACCGAGCGAGCGCCGAAGGCTCTCCTGTGACCCTGTCACCGTGGAATAAAACATCGCTTTTTTCAAATCCTCCGTGGCCAGAGTTTCGAGAGTACAGGCAGCCGCAGAATGCTCTTATCGGCTCCCTCATTCGAGAAGAAAGCCATATATACTCGCTTGCTTCATCTGGGGAACTCTTATACACCGGCTCCGATAGCAAAAACATTCGGGTTTGGAAAAATCTTCAGGAATTTTCTGGTTTTAAATCGACCAGCGGATTAGTCAAAGCAATTGTAATCTCCCGCGAGAGAATCTTCACTGGCCACCAAGACGGAAAGATTAGGGTCTGGAGAGTATTGGACAAGAACCAGTGTACTCATAAACGAGCCGGAACTTTGCCCACTCTAAAAGATGTTTTAAGAACCTCCATTCATTGGAAAAATTACGTCGAAGTTCGACGGAATCGGAGCACTCTCTGGATTAGACACTCCGACGCCATCTCTTGCATGTGCATCAGCGAAGACGAAGAATTTCTTTACTCTGCGTCATGGGATCGAACCATGAAAGTATGGAGACTATACGACTCGAAATGCATCGAGTCCATCCTAGTCCACGACGACGCCGTTAACTCCGTTGTCACCAGCTCTGGCGGATTGGTCTTCACCGGCTCCGCCGATGGCACCGTCAAGGTTTGGCAGAGAGAGAAAAGAGGAAAAGGGACGAAACATACACTCGTCCAAATTCTTCTAAAGCAAGACTCAGCAGTAACGGCGCTCGCCGTTAACGACGCCGGATCAATTGTTTATTCCGGTTCCTCCGACGGCCTGGTTAATTTCTGGTCGGGGGAGAAGAAGTTGACTTCGTCCAACGGCGTCGTCCTCAAAGGACATAAGCTTGCGATTCTCTGCCTCGCGGCGCAGGGTAACATGGTGTTCAGCGGTTCAGCTGATAAGACGATATGCGTGTGGAGGAGAAAGGGTGTGATTCACACGTGCGTATCGGTTTTGGCCGGTCACAGTGGGCCGGTGAAGTGCTTGGCCGTAGAGGAGGATAGAGACTCAAAAAGAAAGGGTGGTGATCAAAATCAACGGTGGATATTGTACAGTGGGAGCCTTGATAAATCAGTAAAAGTGTGGAGCGTGTGCGAGAGTGTACCTGATTATAATCAGATGGCTATGGCTTCATCAGCATCAGCATCAGCAGATCATGGTGTCTGA 1347 49.67 MFPESNGAARSKFGAVLHSDPNFSSTGNDGEFPAMHHGGASDPGNAFHEPNRASAEGSPVTLSPWNKTSLFSNPPWPEFREYRQPQNALIGSLIREESHIYSLASSGELLYTGSDSKNIRVWKNLQEFSGFKSTSGLVKAIVISRERIFTGHQDGKIRVWRVLDKNQCTHKRAGTLPTLKDVLRTSIHWKNYVEVRRNRSTLWIRHSDAISCMCISEDEEFLYSASWDRTMKVWRLYDSKCIESILVHDDAVNSVVTSSGGLVFTGSADGTVKVWQREKRGKGTKHTLVQILLKQDSAVTALAVNDAGSIVYSGSSDGLVNFWSGEKKLTSSNGVVLKGHKLAILCLAAQGNMVFSGSADKTICVWRRKGVIHTCVSVLAGHSGPVKCLAVEEDRDSKRKGGDQNQRWILYSGSLDKSVKVWSVCESVPDYNQMAMASSASASADHGV 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 26864685 26866031 - BLOR08372 Blo17g00826 73214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00826 448 PANTHER PROTEIN JINGUBANG 8 440 - -
Blo17g00826 448 Gene3D - 261 447 IPR015943 GO:0005515
Blo17g00826 448 Gene3D - 194 260 IPR015943 GO:0005515
Blo17g00826 448 Pfam WD domain, G-beta repeat 336 366 IPR001680 GO:0005515
Blo17g00826 448 Pfam WD domain, G-beta repeat 374 423 IPR001680 GO:0005515
Blo17g00826 448 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Blo17g00826 448 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Blo17g00826 448 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 366 IPR001680 GO:0005515
Blo17g00826 448 Gene3D - 78 193 IPR015943 GO:0005515
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Blo17g00826 448 SUPERFAMILY WD40 repeat-like 85 424 IPR036322 GO:0005515
Blo17g00826 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 440 IPR045182 -
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 276 - -
Blo17g00826 448 MobiDBLite consensus disorder prediction 18 66 - -
Blo17g00826 448 SMART WD40_4 285 324 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 86 123 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 197 235 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 238 276 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 330 367 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 124 161 IPR001680 GO:0005515
Blo17g00826 448 SMART WD40_4 372 423 IPR001680 GO:0005515
Blo17g00826 448 Pfam Nucleoporin Nup120/160 88 334 - -
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Blo17g00826 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 276 IPR001680 GO:0005515
Blo17g00826 448 CDD WD40 100 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00826 - - - cit:102609465 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00920 Blo17g00826 CCT
Blo01g01543 Blo17g00826 CCT
Blo12g00920 Blo17g00826 ECH
Blo01g01543 Blo17g00826 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00718 Blo-Chr15:23646177 Blo17g00826 Blo-Chr17:26864685 4.00E-160 dispersed
Blo16g00209 Blo-Chr16:4682824 Blo17g00826 Blo-Chr17:26864685 2.03E-82 dispersed
Blo01g01543 Blo-Chr1:55105169 Blo17g00826 Blo-Chr17:26864685 0 wgd
Blo12g00920 Blo-Chr12:27372180 Blo17g00826 Blo-Chr17:26864685 0 wgd
Blo13g00565 Blo-Chr13:27718178 Blo17g00826 Blo-Chr17:26864685 6.97E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013246 2 1 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 2 1 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00826 Blo_Chr17 FPKM 5.037546 3.601499 1.947379 1.501868 4.714139 4.260201 2.981362 0.0 0.0 0.0