Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00834 ATGGCAGCATCTAGACCCCCTCTACCACCTCCATTTTATGGCAGCACAATCACAATTCTCAGCATCGACGGCAGCGGAATTAGAGGGATTATCCCCGGAACTTCTCTCGGTTTTCTAGAGAAAGAACTTCAGATATTGGACGGTGACGATGCCTGCCTGGCAGATTATTTTGATGTGATCTCTGGGACGAGCACAGGAGGCCTAGTGACAGCCATGTTAACCTCCCCAAATGAGAAAAATCGTCCCTTATATGAAGCAAAGGAAATCATTGAATTTTACCTAAGTCACTGCCCTAAAATCTTCCCACAAAACAAATTTCCTGTATTTGGTTCTGTGATTAACACAATAAGAAATATGATTGGGCCCAAATACAACGGAAAGTACCTCCATAACTTGCTTAAGGAGAAATTGGGCAACACAGTCTGGAAAAGTTCGGCCTTGAATGCGTTGATGTCTGATGTATGCATTTCGACCTCAGCCGCACCGACTTACCTTCCAGCTCAATTCTTCACCACCGAAGACAAACATGGGAAAGTGACGGAATTCAACCTTGTCGATGGCAGAGTTGCTGCCAATAATCCGACTTTAGTGGCAATGAGCGAAGTGACCATGACAATAACGAAAGGAAACCCGAAATTCAACAACATAAAGCCATTGGACTACGCTAAATTTCTTGTGATCTCCTTGGGAACTGGAAACCCAAAAGATGAAATGCAATTCACGACACACAACACATTGCTGGGAGCTACATCATCGGTGGACGTAGCTACAGTGAAGAATTTGGGTGATCTTGTCCAAGTCGGACAAAAACTGTTGAAGCAACCAGTTTCTAGGATTAACATGGCGACTGGAATCTCTGAACCTGTTAGTGCCGAGACTAATGAACAAGCCCTTTCAAGGGATAGGTTATGGAGTGCATCTACCCTAGAAGATGGAGAGGAACAGGATAAAAGGCAGAGGAGAAATGTGCTGGAGAACATTCTAGCGGAGAGGAAAATGGACAGAGAGCTCGCAGATGGAAAGGAGCTGGAGGCCGAGTGCAGAAGATGGAGTTGGAGCTCTCTGGAAGACAGAGCTTTGCCATGGCACTCTAGTGGTGATGAATGCAGAGGAGGCAAGAAGAGGGAGGAGAGAAATGGAGAGGTGGCCGTGGAGAACAGAGCTCGGATGTGGCCCCTCGGGTGTTTTCTGGTAAGGGAGTTCCTCCTTTTTCTTTATGGATTTTGTGAAGGATATATAGTAGGAAATAATGATGTTAAGCATTGCTAG 1269 45.55 MAASRPPLPPPFYGSTITILSIDGSGIRGIIPGTSLGFLEKELQILDGDDACLADYFDVISGTSTGGLVTAMLTSPNEKNRPLYEAKEIIEFYLSHCPKIFPQNKFPVFGSVINTIRNMIGPKYNGKYLHNLLKEKLGNTVWKSSALNALMSDVCISTSAAPTYLPAQFFTTEDKHGKVTEFNLVDGRVAANNPTLVAMSEVTMTITKGNPKFNNIKPLDYAKFLVISLGTGNPKDEMQFTTHNTLLGATSSVDVATVKNLGDLVQVGQKLLKQPVSRINMATGISEPVSAETNEQALSRDRLWSASTLEDGEEQDKRQRRNVLENILAERKMDRELADGKELEAECRRWSWSSLEDRALPWHSSGDECRGGKKREERNGEVAVENRARMWPLGCFLVREFLLFLYGFCEGYIVGNNDVKHC 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 27223699 27229925 - BLOR08380 Blo17g00834 73222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00834 422 PANTHER PATATIN 243 300 - -
Blo17g00834 422 PANTHER PATATIN 143 241 - -
Blo17g00834 422 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 20 199 IPR002641 GO:0006629
Blo17g00834 422 PANTHER XYLOSE ISOMERASE 143 241 - -
Blo17g00834 422 Pfam Patatin-like phospholipase 20 199 IPR002641 GO:0006629
Blo17g00834 422 SUPERFAMILY FabD/lysophospholipase-like 17 287 IPR016035 -
Blo17g00834 422 Gene3D Cytosolic phospholipase A2 catalytic domain 143 322 - -
Blo17g00834 422 Gene3D Cytosolic phospholipase A2 catalytic domain 13 142 - -
Blo17g00834 422 PANTHER XYLOSE ISOMERASE 243 300 - -
Blo17g00834 422 PANTHER XYLOSE ISOMERASE 4 143 - -
Blo17g00834 422 PANTHER PATATIN 4 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00834 - - - jre:108987609 353.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00834 Blo-Chr17:27223699 Blo17g00837 Blo-Chr17:27347621 1.86E-175 dispersed
Blo17g00833 Blo-Chr17:27200641 Blo17g00834 Blo-Chr17:27223699 0 tandem
Blo17g00834 Blo-Chr17:27223699 Blo17g00835 Blo-Chr17:27304661 2.22E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g801 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00834 . Bda08g01332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01450 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015174 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 2 0 1 0 1 0 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00834 Blo_Chr17 FPKM 11.992638 12.239392 15.773108 14.989786 27.849657 25.57419 30.220905 14.787651 13.146152 15.417437