Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00860 ATGGAGTCTTTGGGTGTTTTTCCTGAGGGAGAATGGGGCTCTTTCAGTGCGATTTTCAACTCCGATGAGCTCGAACTGCCTCGTTTTCTCAGACACTTTTCTTCGCCGGAAAATTATGATGCCGGCGTGAGTGATCCGCCGCAGATTTGCATTGATCCTCCGGCTACTATAGGTATTAGTGGGGCTAACAAGAGCTGGTTTTATTCTCTAGACGGTTTGAATACTGATTTTAACTTGACCAAACAAGATTATAGCTATAGTTATAGTTCCTCTCTCAGTCCCCAGCCAAATGATATTTCTGTGTTCGTTGATATGGATTCTGTGGGTGAGAGAAAGACTGGCCCTTTTTTGCCATCTTTAACTGATGTCTTAGAGGAAGATCGTCATCAAGCTCTTTGTATTCATGGAGATCTGGGTGGTGATGGATATGAGAATTTAGACTACAATCACCCAACGTCAACTGCCATTAATTCTAGCAACGAAGAAGGACTCAAAAGGAAATTTACTGCTGGAGTGCTGAATACACCCTTATCTGACAACCCAAAGAAGAAAACTCGAGTCACTCAGCATGCACAAAAGAGTAGAAAAACTGTAGAGTCATCAAAAGCCCCGTTAAAAATCAAGAAGAATTCTTCAAAAACCAGCTTCGAAGAAGACGGCAATGGAGGATCTGAAGGACAGAGCTCTAGTAGTTGCAGTACAGCCGACGATAATGCTTCACAGGAAACTAATGGTGGCTCAAATTCAGACTCTAAAAGGTGCGAAGTTCTCAACTCAAATGGAAAGACCAGAGCCGAAAGAGGGTCAGCAACTGATCCACAGAGTCTCTACGCAAGAAAACGAAGAGAGAGAATAAATGAGAGACTCAGAATCTTGCAGAAACTCGTTCCTAATGGCACAAAGGTCGATATCAGCACCATGCTTGAAGAGGCAGTCCACTACGTGAAGTTTCTGCAGCTTCAAATCAAGCTCTTAAGCTCCGATGATCATTGGATGTATGCTCCAATCGCCTACAATGGAATGGACATTGGTCTACACCAGAAGATTTCTCCAATCCTCTTCCATTGA 1068 43.26 MESLGVFPEGEWGSFSAIFNSDELELPRFLRHFSSPENYDAGVSDPPQICIDPPATIGISGANKSWFYSLDGLNTDFNLTKQDYSYSYSSSLSPQPNDISVFVDMDSVGERKTGPFLPSLTDVLEEDRHQALCIHGDLGGDGYENLDYNHPTSTAINSSNEEGLKRKFTAGVLNTPLSDNPKKKTRVTQHAQKSRKTVESSKAPLKIKKNSSKTSFEEDGNGGSEGQSSSSCSTADDNASQETNGGSNSDSKRCEVLNSNGKTRAERGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDHWMYAPIAYNGMDIGLHQKISPILFH 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28076507 28077956 - BLOR08406 Blo17g00860 73248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00860 355 MobiDBLite consensus disorder prediction 171 255 - -
Blo17g00860 355 CDD bHLH_AtIND_like 270 332 - -
Blo17g00860 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 335 IPR036638 GO:0046983
Blo17g00860 355 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Blo17g00860 355 Gene3D - 270 330 IPR036638 GO:0046983
Blo17g00860 355 PANTHER TRANSCRIPTION FACTOR BHLH54 4 351 - -
Blo17g00860 355 MobiDBLite consensus disorder prediction 204 255 - -
Blo17g00860 355 SMART finulus 275 324 IPR011598 GO:0046983
Blo17g00860 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 351 - -
Blo17g00860 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01498 Blo17g00860 CCT
Blo01g01498 Blo17g00860 ECH
Blo17g00860 Blo18g00720 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01498 Blo-Chr1:54505556 Blo17g00860 Blo-Chr17:28076507 8.99E-70 dispersed
Blo11g00365 Blo-Chr11:3088018 Blo17g00860 Blo-Chr17:28076507 5.90E-24 dispersed
Blo17g00860 Blo-Chr17:28076507 Blo01g00628 Blo-Chr1:7078735 4.44E-20 dispersed
Blo12g00959 Blo-Chr12:27725668 Blo17g00860 Blo-Chr17:28076507 7.94E-18 wgd
Blo17g00860 Blo-Chr17:28076507 Blo18g00720 Blo-Chr18:17979927 3.27E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13546 PF00010 HLH 1.10E-08 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00860 - - tcc:18591992 289.271