Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00862 ATGGCCCTCCAAGCTATTACCTCCCCGGTGGCGCCCACGCCGGTGTTTCAGTGCGACGATTCAAGCCTCAACTACTTGGAGCCATGGGCGAAGGGGAAGCGGTCCAAACGACAGCGTTTGGACGGTGCAACGACGGAAGACGAGTATCTTGCTCTCTGCCTCGTCATGCTCGCTCGCGGTGGCCGTCCGGTTTCGTCTTTGCCAGAGAGTGAAGCTCCGTCGGCGGCGAAGCCCATCTACAAGTGTTCTGTTTGTGACAAGGCGTTTTCTTCGTACCAGGCTTTGGGTGGACACAAGGCGAGTCACCGGAAGAACGGCGGCGGAGAAGATCAATCGACGTCGTCTACGGTCACGACGACCTCTGCTCTAACAGCAACCACCTCTGGCTCAGCTTCTATCGCCGGAGTAAGAACCCACGAGTGCTCTATTTGCCACAAGTCGTTCCCGACCGGCCAGGCTTTGGGCGGACACAAGCGCTGCCACTACGAAGGCGGCAATAAATCCAGCAGCGCCACCTTGACCTCGTCGGAAGGAGCCGCCAGCTCCAGCCATATCCGCGGCTTCGATCTCAACCTCCCAGCTTTACCGGAACTCTCAGCGAAGTTCTTCGTCTCCGGCGACGACGAGGTAGAGAGTCCTCTTCCTACAAAGAAGCCTCGTCTTCTGATACCGCCAAAAATGGAAGCCTCTCAAGATCACTGA 702 57.69 MALQAITSPVAPTPVFQCDDSSLNYLEPWAKGKRSKRQRLDGATTEDEYLALCLVMLARGGRPVSSLPESEAPSAAKPIYKCSVCDKAFSSYQALGGHKASHRKNGGGEDQSTSSTVTTTSALTATTSGSASIAGVRTHECSICHKSFPTGQALGGHKRCHYEGGNKSSSATLTSSEGAASSSHIRGFDLNLPALPELSAKFFVSGDDEVESPLPTKKPRLLIPPKMEASQDH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28115317 28116018 + BLOR08408 Blo17g00862 73250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00862 233 MobiDBLite consensus disorder prediction 207 233 - -
Blo17g00862 233 Pfam C2H2-type zinc finger 80 104 - -
Blo17g00862 233 Pfam C2H2-type zinc finger 139 162 - -
Blo17g00862 233 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Blo17g00862 233 MobiDBLite consensus disorder prediction 98 119 - -
Blo17g00862 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Blo17g00862 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Blo17g00862 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Blo17g00862 233 SUPERFAMILY beta-beta-alpha zinc fingers 79 161 IPR036236 -
Blo17g00862 233 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Blo17g00862 233 SMART c2h2final6 80 102 IPR013087 -
Blo17g00862 233 SMART c2h2final6 139 161 IPR013087 -
Blo17g00862 233 Gene3D Classic Zinc Finger 78 161 - -
Blo17g00862 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00982 Blo-Chr12:27851538 Blo17g00862 Blo-Chr17:28115317 3.76E-83 dispersed
Blo17g00862 Blo-Chr17:28115317 Blo02g00390 Blo-Chr2:4613664 9.84E-20 dispersed
Blo17g00862 Blo-Chr17:28115317 Blo18g00718 Blo-Chr18:17808813 1.79E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13547 PF13912 zf-C2H2_6 1.60E-12 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00862 - - zju:107433725 278.485