Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00863 ATGGTAGCTGCTGTATCCGCGAATTTGAATTCCAAAAGTACGCTTCAGAGAGGGACTCATCCTCAAAAGCCTACCAGACCGCCGTTATTACCTTCGGAGCCTGACAATGTTATGGCTCTTCGACGCCCCAAATCCCGAGAGATTACTTCTCGCTACATGTCGTCTTCTACCCCTTCCACTCCGGCATCGATTTCCCGACGATGCCCTTCTCCTTTAGTTTCGAGAACGCCTACAGCTACGGCCGTGACGACTCCAAAGACGTCGGCTGTGACTGCAAGTAAGCGGTCGCAATCTGTTGAGCGGAAGCGGAATGGAACTCCTCGGCTTAATTATTTGGATTTCAGAACAGGAAATACTGTTAGTAATGGAGATAGAGGCGGGGGTGGGGGTGAGATGTCCTCTGCTCAAAAAATGTTGTTGACTTCGACGAGAAGCTTATTAGTTTCGTTTCAAGGGGAGTCGTTTTCTTTGCAGGTTAGTAAGGTAAAGCCAGCGCCATCGCCGATTGCCCGTAAGGGAACGCCTGAGCGGAGAAAGGCGGTAGTACCTGCTAGAGGAGGGGGAGGTTCTTCTGATCTATCAGAGAATACGAAGACGATGATAGATCAGCCACGTTTCCCTGTAAGATTGCGGCAGGGGGATTGCATGAGCGGGAGTTTTGATTGGATGGATGATAAAGAAAAGTTGAGGAGTGGATCTGGGAATGTAGTGAGAGCACTACAGAATTCCATGGCTAACGCTGGAGGCGCATTCGATGGAAGCCTTAGCTCTACGTCTGGCAATGTTGATTTGGAGAATGAAACTGATTTAGTTGCCGATGGAAATTCTGGTAGTGGCTCAGATGTGCAGTCTGATCGTCTTACTTCTGACACTGAAAGTGTGTCGTCTGAAAATACTTCAGGTTGTGGCGGAAAAGGTCAACGTGGACCTCGTGGAGTAGTAGTACCAGCAAGGTTTTGGCAGGAGACTAATAATAGACTGAGACGCCAGCAGGACCTGGGTTCAACACTATCCAATCACCCTGAAGGGCCAAAGCCTTTATCTTCTTCCAAGCTTAACACTCCAAAAAAGTTAACAATTGATTGTCCCGCATCTATAACATCTCCCCGTGGAGTTTCAAATTGTAGAGGACGGTCATCTCCTACACGCGGACTATTATGGCCTGCATCACCGAGTAGGCTGTCGGCATCGTCTGCATCATCACCTGCCAGAGGAATCAGTCCATCTCGAATGAGGAATGCATTGGCAAATACACCCTGTACCAATTTGAGTAACGAATTCTCTATCTCAAATTTTATGACTGATGTAAGAAAGGGGAAAATTGGGGAGAATCAGGTTGCTGATGGACATTTCTTAAGGCTCTTACATAACCGGCTCTTGCAGTGGCGTTACGTGAATGGAAAAGCAGATGCCTCCCTATCTGCTCAAAGGTTAAATGCAGAGAGAAGCCTGTATAATGCATGGATAAGCACCTCAAAACTTCGTGAATCTGTCAGAGGCAAAAGATACGAGTTACAATCACTGACGCAAAAGCTGAAGTTAACTGCCATCCTCAAGTGGCAAGGGGTGTCTCTAGAAGATTGGGATCTTCTGGATCAGGATTTCTCTACTTCTCTATTAGGTGTTACTGAAGCCTTGAAGGCTAGCACCCTCCGACTTCCTGTCGTCAGCGGTGCAAAGGCGGACCTCCTAAAGATTAAAGACGCCATTAGTTCGGCTGTTGATATTATGCAGGCAATGACGTCTTCAATTTGCTTATTGTCATCAAAGGTTGGGAATGTGAACTCTTTAGCATTAGAACTTACAGATGCAAGTGCAAGAGAGCGAGCTATACTCTACGATTGCAGAGATATTCTGTCGATAATAGCCGCAACACAGTACGTTTGGTATGCCGTGGATTCATCTTTCAGTGGTGGCCAAAGATGCTGA 1929 46.97 MVAAVSANLNSKSTLQRGTHPQKPTRPPLLPSEPDNVMALRRPKSREITSRYMSSSTPSTPASISRRCPSPLVSRTPTATAVTTPKTSAVTASKRSQSVERKRNGTPRLNYLDFRTGNTVSNGDRGGGGGEMSSAQKMLLTSTRSLLVSFQGESFSLQVSKVKPAPSPIARKGTPERRKAVVPARGGGGSSDLSENTKTMIDQPRFPVRLRQGDCMSGSFDWMDDKEKLRSGSGNVVRALQNSMANAGGAFDGSLSSTSGNVDLENETDLVADGNSGSGSDVQSDRLTSDTESVSSENTSGCGGKGQRGPRGVVVPARFWQETNNRLRRQQDLGSTLSNHPEGPKPLSSSKLNTPKKLTIDCPASITSPRGVSNCRGRSSPTRGLLWPASPSRLSASSASSPARGISPSRMRNALANTPCTNLSNEFSISNFMTDVRKGKIGENQVADGHFLRLLHNRLLQWRYVNGKADASLSAQRLNAERSLYNAWISTSKLRESVRGKRYELQSLTQKLKLTAILKWQGVSLEDWDLLDQDFSTSLLGVTEALKASTLRLPVVSGAKADLLKIKDAISSAVDIMQAMTSSICLLSSKVGNVNSLALELTDASARERAILYDCRDILSIIAATQYVWYAVDSSFSGGQRC 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28168608 28172808 - BLOR08409 Blo17g00863 73251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00863 642 MobiDBLite consensus disorder prediction 391 410 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 49 86 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 165 197 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 366 380 - -
Blo17g00863 642 PANTHER AUGMIN FAMILY MEMBER 1 626 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 269 313 - -
Blo17g00863 642 Pfam QWRF family 293 612 IPR007573 -
Blo17g00863 642 PANTHER QWRF MOTIF-CONTAINING PROTEIN 9 1 626 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 1 21 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 334 410 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 1 86 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 269 303 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 334 356 - -
Blo17g00863 642 MobiDBLite consensus disorder prediction 108 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00863 - - - jre:109013978 609.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00934 Blo-Chr2:36204348 Blo17g00863 Blo-Chr17:28168608 2.37E-124 dispersed
Blo15g00126 Blo-Chr15:1013206 Blo17g00863 Blo-Chr17:28168608 1.49E-06 dispersed
Blo16g00669 Blo-Chr16:26221638 Blo17g00863 Blo-Chr17:28168608 3.76E-19 dispersed
Blo16g00917 Blo-Chr16:37070717 Blo17g00863 Blo-Chr17:28168608 2.44E-62 dispersed
Blo17g00863 Blo-Chr17:28168608 Blo03g00075 Blo-Chr3:2651419 1.54E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g663 . . . . . . . . Cmo05g00149 Cmo12g00532 . Cma09g00280 . Car12g00536 Sed05g2623 Cpe06g00192 Cpe07g00513 Bhi04g00407 Tan02g1017 Cmetu01g0451 . Hepe08g1326 . Lcy13g2128 Cla08g01614 Cam08g2116 Cec08g1701 Cco08g1824 Clacu08g1801 . Cre08g1583 . . Cone17ag0882 Cone20ag0228 Lsi04g01495 Csa04g02466 . Cme03g02095 Blo17g00863 . . . . Bpe05g00386 . Bma05g00054 . . Cmo09g00274 Cma12g00592 Cma05g00148 Car05g00128 Car09g00236 Cpe11g00126 . Bhi09g03240 . . . Hepe01g1820 Mch11g0354 . Cla05g02098 Cam05g2251 Cec05g2270 Cco05g2312 Clacu05g2247 Cmu05g2110 Cre05g2233 Lsi08g01518 Csa02g01902 Chy07g00180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012087 0 2 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00863 Blo_Chr17 FPKM 8.553212 8.624704 10.839841 11.305497 16.855415 16.110531 13.867199 8.910703 9.493945 8.164456