Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00865 ATGGAAGCTGCTAGCCAGAGCGGAAATATTGACAGTCAAGTACAGCCATCTCAGCAGGAACAGAATTCATCTGAAATACAGGTAAAGCAAGAGCCATTGAATATTGAGAAGCAGGTGTATAATAAAGTTCTCATAACACCGCAGATGAAGCCCCAGGAAAATCACAAATATGAACCAGCAGCAGATAGGGACCCCAATCAGATTTCTCAAGTGACTGGGGTTCCAGTGTCTGAAAGTAATCCAACACTTCATAATGAACCAGACAGAATGTTCAATCGAGACAGTGAATCTCAATTCTTAAAACTTCAAAAGATGAGTAATCAACAAGCAACTATCTTAGATAGGACAAGCAACCAAATCAATCGTGGTGGTGGTAAGCAGGTTCCATTTGCTGTACTACTGCCTGTATTGTTGCCTCAACTGGATAAAGACAGAGCAATGCAACTTCAAAGTCTATTTAACAGGCTGAAGGCGAATGATTTTGTGCGGCTCATGAGAAGTGTTGTGGGAGATCAAATGCTCAGATTAGCTGTTTCTAAAGTTCATATCCAGACTCCACCTGGGGCACAGCAGCTCCCTCCAAGGACGGCACCAATAAGTGCTGGTGCCACAAACTTGACTGATCGACAATCATTTGCACAACTTCATCAGAAAGGCGCCAACTCTTCCGCAATCTCAAATCTTCATTTATCAGCAACCCAGGGACAACCTAATACTGGCTACGTTAAAATAGAAAACAGTGAAGAATCATCTCAAGAAGTAGGACGACAAAGTACTGGAAATCCTTTATCTACTTCCATTTCAGGTGCTATAAATCAGGGTACAAGAAGAGAGCAATCATCAGCTACCATACAAGGATTAGAAAAGCCTCCGCAACAGCAGGTTCCATTTCAACAAAAAGCCTTCTCTATGTACGGAACAGGAAGCAATACTAGCAATTATCATCCATCTTCAGGGTCAAGCATCACTACTTCCGCATCATCTTTTAAATCACCATCCCAAGAGTTACAAATGAGGCAAGTTCCTCAACATCGGAGCATTTCAGCTCAATTAGGGGGGAGCCTGTCAGGCATGAACATGGTAAGTGTTCCAAAATTTGAAGGGAAAAATTTTATGGCCAACGTGGCATTAACCTGGTCTTTTTCACACTCTCTCTCTTCTTTAACTTCCCAGCAGGGTGACCTGGGAAGCGGAACAGCTGGTCCTGTAAAGGATGAGTCTTCAGAAAAACAGTCTTCTAAAATGGGTTTTACAACAGCTATTGGTGGCCCTTCAACATCTGGAAATGTTTTTCCGTCAAGTACAGTTTCCCCAAATATAACCACGCAAGTGGACTCCAATGCCATGTATGATTCTGTCAAGTTATTTACTGCGAGCTTAAGAGGACCATGGCAGTTATGGATTAAGCTAGACTCTCGGAATCCTTCTATCACTGTAGCTCCTGGGGTTAATAGGACACCTCCAAAGAAACCTTCAATGGGCCAAAAGAAACCTCTTGAAACAGTTGGTGCTTCACCGCCTCCATCAAGCAAGAAGCAAAAACTGGCGGGTGCCTTTTTGGATCAAAGCATCGAACATCTCAATGATGTTACTGCTGTCAGTGGAGTTAACATTAGGGAAGAAGAAGAACAGTTGTTTTCTGGTGTAAAGGATGACCTTCGGGTATCAGAAGCATCACGTAGAGTTGTGCAAGAAGAAGAAGAAAGACTTATCTTGCAGAAGACTCCATTGCAGAAAAAATTGTCTGAAATTATGGTGAAATGTGGTTTAAAGGGTATAAACAACGATGTTGAGAGATGTCTCTCGCTGTGTGTGGAGGAGCGAATGCGTGGTCTGATAACTAATTTAATCAGATTGTCAAAGCAGAGGGTTGATGCTGAATTGCCAAGACACAAAACTGTTATCACCTCTGATGTACGGCATCAAATTATGATGATGAATTGGAAAGCAAAAGAAGAATGGGAGAAGAAACAGGCGGAAGTAGAAAAACTCAGGAAGCTTAATGAAGTGAGTGCTGTATCTGAAGTGATATTTTGGAATCCAGAGGACGGTAATGGAAGTGCCGCTGATAAGGAGAAAGATGATGGCCGTACTAAGTCGGTTAAGGTAAACCGGGATCAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCAAGAGCTGCTGTTGGAGGAGACGACGTGCTTTCAAAATGGCAGCTTATGGCTGAGCAAGCTCGGCAGAAACGCGAAGGAGGGACAGATGGACATGGAGCATCGGCCTCCTCTCAGCCTGTTAAAGATGTTACCCGCAAGCCTACATCAAATTTGGGTAGAAATGCAAATGACAGTCAAGAAGTAGAGAAAAAGGGGCCTACTAGAAAAATTGGTAGGAACCAAGTGATGGCGCCTCAGCCTGGATTAGCTCGAAGTATCTGTGTTAAAGATGTGATTGCTGTTCTGGAAAGAGAACCCCAAATGTCTAAATCCACCACGCTGTATCGGTTGTATGAGAAGATTCGTTCCGATGGTAATGCTGATTAA 2526 43.07 MEAASQSGNIDSQVQPSQQEQNSSEIQVKQEPLNIEKQVYNKVLITPQMKPQENHKYEPAADRDPNQISQVTGVPVSESNPTLHNEPDRMFNRDSESQFLKLQKMSNQQATILDRTSNQINRGGGKQVPFAVLLPVLLPQLDKDRAMQLQSLFNRLKANDFVRLMRSVVGDQMLRLAVSKVHIQTPPGAQQLPPRTAPISAGATNLTDRQSFAQLHQKGANSSAISNLHLSATQGQPNTGYVKIENSEESSQEVGRQSTGNPLSTSISGAINQGTRREQSSATIQGLEKPPQQQVPFQQKAFSMYGTGSNTSNYHPSSGSSITTSASSFKSPSQELQMRQVPQHRSISAQLGGSLSGMNMVSVPKFEGKNFMANVALTWSFSHSLSSLTSQQGDLGSGTAGPVKDESSEKQSSKMGFTTAIGGPSTSGNVFPSSTVSPNITTQVDSNAMYDSVKLFTASLRGPWQLWIKLDSRNPSITVAPGVNRTPPKKPSMGQKKPLETVGASPPPSSKKQKLAGAFLDQSIEHLNDVTAVSGVNIREEEEQLFSGVKDDLRVSEASRRVVQEEEERLILQKTPLQKKLSEIMVKCGLKGINNDVERCLSLCVEERMRGLITNLIRLSKQRVDAELPRHKTVITSDVRHQIMMMNWKAKEEWEKKQAEVEKLRKLNEVSAVSEVIFWNPEDGNGSAADKEKDDGRTKSVKVNRDQDDKMRTTAANVAARAAVGGDDVLSKWQLMAEQARQKREGGTDGHGASASSQPVKDVTRKPTSNLGRNANDSQEVEKKGPTRKIGRNQVMAPQPGLARSICVKDVIAVLEREPQMSKSTTLYRLYEKIRSDGNAD 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28284555 28290515 + BLOR08411 Blo17g00865 73253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00865 841 CDD TAF4 522 829 IPR007900 GO:0005669|GO:0006352
Blo17g00865 841 MobiDBLite consensus disorder prediction 479 513 - -
Blo17g00865 841 MobiDBLite consensus disorder prediction 681 713 - -
Blo17g00865 841 MobiDBLite consensus disorder prediction 751 776 - -
Blo17g00865 841 ProSiteProfiles RST domain profile. 121 187 IPR022003 -
Blo17g00865 841 MobiDBLite consensus disorder prediction 390 414 - -
Blo17g00865 841 Pfam Transcription initiation factor TFIID component TAF4 family 527 830 IPR007900 GO:0005669|GO:0006352
Blo17g00865 841 MobiDBLite consensus disorder prediction 1 31 - -
Blo17g00865 841 MobiDBLite consensus disorder prediction 1 32 - -
Blo17g00865 841 Pfam RCD1-SRO-TAF4 (RST) plant domain 126 182 IPR022003 -
Blo17g00865 841 MobiDBLite consensus disorder prediction 738 799 - -
Blo17g00865 841 PANTHER IP01149P-RELATED 4 835 - -
Blo17g00865 841 MobiDBLite consensus disorder prediction 247 346 - -
Blo17g00865 841 Gene3D Histone, subunit A 572 617 IPR009072 GO:0046982
Blo17g00865 841 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 4 835 IPR045144 GO:0005669|GO:0006352
Blo17g00865 841 MobiDBLite consensus disorder prediction 686 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00865 K03129 TAF4; transcription initiation factor TFIID subunit 4 - tcc:18592004 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00865 Blo-Chr17:28284555 Blo18g00716 Blo-Chr18:17469447 2.62E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00865 Blo_Chr17 FPKM 3.77405 3.220734 43.36367 40.272701 103.539276 112.987541 110.386658 31.042578 32.949554 30.606319