Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00868 ATGCCAATCGCCTTGCCTCGCCAGACGCCAATCGCCAGTCGTCTCACCTCGCTAGACGCCTCACCTGGCCAGACGCCAGTCGCCAGACCTCGCCAGACACCAGTCACCTTGTGTTCTCGCCTCATCAGACGCCAGTCGCCTCACCAGACGCCAGTCCATTCTCGGTTCTTGCCTACCCCTGTTCTTGCTCTTCCCCTTCGAGATAATCTGATGCAACAATCTGTATCCCTCTTGCAAGTCAAGGATGCTTTGTTTAAGAGAAAGGGAGCATCTAGACTAACCCGTTTTGCAATAGATGGACATAGTCAGGTTGGGAACCAAAACCGACTGGAACCGAAAATGGAACCGAACTCAGTTCCGGTTCCGGTCCCTTGCGGTTCCGGTTCTGATTCCTCAATCTCGAAACTGATAACCGAACGTTTTGATCGCTGGGAAATGGATCCGTTTTTCTTGGCGGCGGAGGAAGTTCAAGAATCTGCAGACAGAATGGAATCTGCATATAGAACATGGATACATGCCATGAAAGATTCTTCCAGTTTATGGAACCGTGATGAGCTTCAAAGGGATTTGCGAACTGCACTTGGCACTACCAAATGGCAGTTAGAGGAATTCGAACGGGCTGTTAAATCAAGCTATATTAAAATCTTAAATGAAGATGCGAGGGACAGACACCATGAATTTATCATCGCAATTGAGGATCAGATTATGAAAATTGAAACTATATTACACGAATCTCCGATGCCAGAAGGAAAGATGCCGGTACATTGGGCACACTTGGATGAAGGTGAAAGGGAAGAACTAGCATTGTTTCTTTCAGGACCCTCACCATCTAGAGTTACCACTGAAAAGTTGCATGGGCACAGAAGAGCAGCTAGTGCTAGTGCTGATATTGGAGCCTGGAAGATTGCAATTTCTGATGGTGATCATAAGCAAAGCTCATTTAATGTAGAGGCCCATCACCAAGTGAGGAAGATACCTAGTTTTTCTGGCTTTCTTAGCTCTGTTCAATCTGCAACAAATCTGAAGTTATCAAAGAATGGTTTTAGGAAGTTGAAGGTGACGAATGTGCATCAGGAATCAGATTCTGCGTCGTTGCAATCCACTCAGTTGACTAGGGGTGTGAATGTGTGCTATGAAAAAAATAAGAGTTGCCTGGATAGATGTGATGATTATTATGATAAGCAACTCTATGGGTGGTACGGAGCCATCCAGAGGCAGCTTCAGAGGTCTCAGTATCAAATGCAATATAGTCGCTCCGTTCAATTGACATTTTGGATGGTTCTCCTTCTCTTGATTGGCTATATGGCGAATATCTCACTCGGTCGAATCACGCCTTTCTTATCTCCTTGTAATGGAAATTTGGGTCATTCAATCATCCTTGATGAAGGGTGGTTGGCATGA 1401 45.54 MPIALPRQTPIASRLTSLDASPGQTPVARPRQTPVTLCSRLIRRQSPHQTPVHSRFLPTPVLALPLRDNLMQQSVSLLQVKDALFKRKGASRLTRFAIDGHSQVGNQNRLEPKMEPNSVPVPVPCGSGSDSSISKLITERFDRWEMDPFFLAAEEVQESADRMESAYRTWIHAMKDSSSLWNRDELQRDLRTALGTTKWQLEEFERAVKSSYIKILNEDARDRHHEFIIAIEDQIMKIETILHESPMPEGKMPVHWAHLDEGEREELALFLSGPSPSRVTTEKLHGHRRAASASADIGAWKIAISDGDHKQSSFNVEAHHQVRKIPSFSGFLSSVQSATNLKLSKNGFRKLKVTNVHQESDSASLQSTQLTRGVNVCYEKNKSCLDRCDDYYDKQLYGWYGAIQRQLQRSQYQMQYSRSVQLTFWMVLLLLIGYMANISLGRITPFLSPCNGNLGHSIILDEGWLA 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28374940 28384877 + BLOR08414 Blo17g00868 73256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00868 466 SUPERFAMILY t-snare proteins 146 240 IPR010989 GO:0016020|GO:0016192
Blo17g00868 466 PANTHER EXPRESSED PROTEIN 278 435 - -
Blo17g00868 466 PANTHER EXPRESSED PROTEIN 139 278 - -
Blo17g00868 466 PANTHER OS05G0443700 PROTEIN 278 435 - -
Blo17g00868 466 PANTHER OS05G0443700 PROTEIN 139 278 - -
Blo17g00868 466 Gene3D - 145 245 - -
Blo17g00868 466 Pfam Syntaxin 6, N-terminal 147 238 IPR015260 GO:0016020|GO:0048193
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00868 - - - mnt:112093366 379.407
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00868 Blo18g00713 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00868 Blo-Chr17:28374940 Blo12g00391 Blo-Chr12:20643691 9.05E-21 dispersed
Blo14g00662 Blo-Chr14:14211411 Blo17g00868 Blo-Chr17:28374940 7.58E-41 transposed
Blo17g00868 Blo-Chr17:28374940 Blo18g00713 Blo-Chr18:17270358 1.49E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g674 . . . . . . . . Cmo05g00152 Cmo12g00523 . . . . Sed11g0927 . Cpe07g00508 Bhi04g00402 Tan02g1760 Cmetu03g1564 . Hepe08g1320 . Lcy13g2123 Cla08g01609 Cam08g2110 Cec08g1695 Cco08g1819 Clacu08g1795 . Cre08g1578 Cone4ag1608 Cone7ag1344 Cone17ag0875 Cone20ag0223 . . . Cme03g02090 Blo17g00868 Blo18g00713 . Bda01g01595 Bpe02g01782 Bpe05g00037 Bma01g00672 Bma05g00048 . . . Cma12g00586 Cma05g00152 Car05g00132 . Cpe11g00128 . . . . . . . . . . . . . . . Lsi08g01513 Csa02g01907 Chy03g01579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003617 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00868 Blo_Chr17 FPKM 0.079409 0.069286 0.170263 0.118489 0.24892 0.255676 0.197679 0.555852 0.330073 0.307712