Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00872 ATGAAATCTCTCTGCAATTTCATCGAAATCCCATCAAAATCCTCGCCTCCTTCCTTCAGATTACCCTTTTTGCGTCATCAAACCAAGCTTCGTCCCTCTCAGTTTCCCTGCAGTAGCGAGCCCATCAATTTTCGTACCGGAGTTGCCATTATCCGAAAACCCTCTGCGCTATCCATTACCACTGTTACGAAAAGGGTATGTCGAATCAGGGCTGTCGCCGGCGGCAATGGTTCGCCGGCGGCGTTGTCTGAGATCGACATGGTAGAAAACAAACAAGGGGTTTTCACACCCAAGCAGAATAAGGTCGTTGTCCTCTGGGACCTCGACAACAAGCCGCCTCGTGGACCGCCGTACGAGGCGGCGATGGCTCTCCGACGATTTGCAAATCGTTTTGGTGACGTGATCGACATCTCTGCCTACGCTAACCGCCACGCCTTCGTCCATTTACCACAGTGGGTGCTCGAAGAAAGGCGAGAACGGAAGCGATTAGACATTCTAGAGCGAAAGGGTTTGTCTAAACCCTCCGATTTGTACGTATGTGGCGTTTGTGGCCGGAAGTGCAAAACCAATCTCGATCTGAAGAAGCATTTCAAACAACTCCACGAGCGAGAGCGGCAGAAGAAACTGAGCAGGATGAGATCTTTGAAAGGTAAAAAGCGTCAGCGTTATAAAGAGAAACACATATCTGGAAATGAGAAGTACATTGCGGCTGCGAGGTCATTAATCACTCCGAAGGTGGGATATGGGTTGGCTCCTGAATTGCGACGAGCTGGGGTTTTTGTGAAGACGGTGGAGGACAAACCTCAGGCGGCAGATTGGGCGTTGAAGAGGCAAATGCAACATTCCATGAGTCGAGGGATTGACTGGTTGTTTCTGGTTTCAGACGATTCTGACTTTTCGGAGATGTTGAGGCGGGCGAGGGACGCCAATTTGAGGACAGTGGTGGTCGGCGATTGGGACAGAGCTTTGGGGAGACATGCCGATTTGTGGGTACCTTGGACTGGCGTCGAAAATGGGGAAATTTCAGAGGAAGATTTGGAGCTCAAAAGCCGGTGGAGAAGTGAAGAATCTGATGAAAACGATGAAGTGGAGACCGATTATGGATTGGACAGCATCGTGGATGAGCTTGTCAGTGTAAGAACAGAGTTAAACAGGTTGAGAATTTCTGCATTTTCAGAAGGGGAAGAGGAATATGACCATTTGTGGAGTTACAGTGAGGATGAGGAAGATGACGACGACTACTCCTGA 1248 49.52 MKSLCNFIEIPSKSSPPSFRLPFLRHQTKLRPSQFPCSSEPINFRTGVAIIRKPSALSITTVTKRVCRIRAVAGGNGSPAALSEIDMVENKQGVFTPKQNKVVVLWDLDNKPPRGPPYEAAMALRRFANRFGDVIDISAYANRHAFVHLPQWVLEERRERKRLDILERKGLSKPSDLYVCGVCGRKCKTNLDLKKHFKQLHERERQKKLSRMRSLKGKKRQRYKEKHISGNEKYIAAARSLITPKVGYGLAPELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRARDANLRTVVVGDWDRALGRHADLWVPWTGVENGEISEEDLELKSRWRSEESDENDEVETDYGLDSIVDELVSVRTELNRLRISAFSEGEEEYDHLWSYSEDEEDDDDYS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28647917 28649164 + BLOR08418 Blo17g00872 73260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00872 415 MobiDBLite consensus disorder prediction 400 415 - -
Blo17g00872 415 MobiDBLite consensus disorder prediction 394 415 - -
Blo17g00872 415 Gene3D - 95 334 - -
Blo17g00872 415 PANTHER - 53 395 - -
Blo17g00872 415 CDD PIN_LabA-like 188 318 - -
Blo17g00872 415 ProSitePatterns Zinc finger C2H2 type domain signature. 180 201 IPR013087 -
Blo17g00872 415 PANTHER OS06G0166200 PROTEIN 53 395 - -
Blo17g00872 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01059 Blo-Chr2:40814703 Blo17g00872 Blo-Chr17:28647917 2.06E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13548 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00872 - - csv:101206044 528.094