Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00873 ATGGCACAGATTCAGGTTCAACATCAGGCTCCCATGGCTGCTTCTGGTGCGAATGGCGTGGTTGTGGCTGCAGGAGCGAGCCCTGGTGGGGCCCCGTTTATTCCGACGTCGCTTTATGTGGGAGATCTTGACCTAAACGTCACGGACGCGCAGCTTTATGAACTGTTTAATCAAATTGGTCAGCCATTTGTGTATCTGATAACCTGTGAAATCGAAGTAATTTTCAATTTATATTTTGAGTTGGTTTCTCATTCGGCCAGGGCACTAGATGAATTAAATTTTACTCTATTGAATAACAAGGCCATTAGAATTATGTATTCTCACCGTGATCCAAGTAGTCGCAAGAGTGGTACTGCAAATATTTTCATCAAGAATCTGGACAAGGCTATTGATCATAAAGCATTACACGAGACTTTTTCATCCTTTGGAAGTATTCTTTCATGCAAGATAGCTCTTGATACTTCGGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCCCAAAATGCAATAGACAAGTTAAATGGGTTGCTGATTAATGACAAGCAGGTTTATGTTGGACACTTCCTTCGTAAACACGAAAGAGAGAGTTCTTCCGATAAGGCAAAATTTAATAATGTCTACGTGAAGAATTTGTCCGAGTCAACAACAGATGAAGACTTGAAGAATATTTTTGGTGAATATGGAACTATCACCAGTGCTGTGGTGATGCGAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTCAACTTTGAAAGCGCAGATGATGCTGTTAAAGCTGTTGATGAACTGAATGGGAAGAAATTTGAGGAAAAGGAATGGTATGTTGGGAAAGCTCAGAAAAAATCAGAACGAGAAGTTGAGCTGAAGGGTCGATTTGAGCAAACTGTGAAGGAAACATTTGATAAAAATCAAGGTGTAAACTTGTATATCAAGAACTTGGATGACAGCATTGATGATGAAAAACTCAGAATTCTTTTTGCTGAATTTGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTCAGTAGAGGTTCTGGATTTGTTTCTTTTGCAATTCAGGAAGAAGCATCTCGAGCTCTTGCTGAGATGAATGGTAAAATGATTGTCAGTAAACCTCTCTATGTGGCACTGGCACAGCGAAAAGAAGAGAGAAGAGCTAGGTTGCAGGCTCAGTTTTCTCAAATGAGGCCTGTGGCAATTGCACCAGCTGTTGCTCCTCGTTTGCCTATGTTCCATCCAGGTGCTGTAGGTCTTGGTCAACAGTTTTTATATGGACAACCTCCTCCTGCAATAGTTCCCCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCAGGAATGAGACCTGGAGGGTCTCCTATGCCAAACTTCTTTGTTCCTATGGTTCAGCAGGGTCAGCCTGGTCAACGCCCTGGAGGTCGGCGTGGGTCAGGTCCTCTGCAACAAACCCAGCAGCCTGTTCAACTGATGCAACCTCAGATGATTCCAAGGGGGGGACGACACTATTATCGATACCCTCCTGGTCGCACCATGCAAGATGGACCAATGCCTGGCGTTGCCGGAGGATTGCTTTCATCTCCTTATGAGTTGGGTGGCATGCCAATGCGAGATCCATCTCTTGGACAGTCTGCTCCTGTACCTGCTTTGGCTACTGCTCTTGCCAATGCTCCTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCATTGTATCCTCAGGTGGATCAGTTGGAGCATGAATCAGCAGCTAAGGTTACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTTGAGTCACCTGAGGCTTTGAGGGAAAAAGTTGCAGAAGCATTGGATGTTCTGAGGAGTGTTGCCCAACATCGGGGGAGCAATGCAGCAGCTGATCAGCTTTCGTCTCTCTCACTTGGCGATGATCTTTAG 1959 44.67 MAQIQVQHQAPMAASGANGVVVAAGASPGGAPFIPTSLYVGDLDLNVTDAQLYELFNQIGQPFVYLITCEIEVIFNLYFELVSHSARALDELNFTLLNNKAIRIMYSHRDPSSRKSGTANIFIKNLDKAIDHKALHETFSSFGSILSCKIALDTSGLSKGYGFVQFENEESAQNAIDKLNGLLINDKQVYVGHFLRKHERESSSDKAKFNNVYVKNLSESTTDEDLKNIFGEYGTITSAVVMRDGDGKSRCFGFVNFESADDAVKAVDELNGKKFEEKEWYVGKAQKKSEREVELKGRFEQTVKETFDKNQGVNLYIKNLDDSIDDEKLRILFAEFGSITSCKVMCDPNGVSRGSGFVSFAIQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAIAPAVAPRLPMFHPGAVGLGQQFLYGQPPPAIVPQAGFGYQQQLVPGMRPGGSPMPNFFVPMVQQGQPGQRPGGRRGSGPLQQTQQPVQLMQPQMIPRGGRHYYRYPPGRTMQDGPMPGVAGGLLSSPYELGGMPMRDPSLGQSAPVPALATALANAPPEQQRMMLGEALYPQVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALREKVAEALDVLRSVAQHRGSNAAADQLSSLSLGDDL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28792878 28796836 + BLOR08419 Blo17g00873 73261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00873 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Blo17g00873 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Blo17g00873 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Blo17g00873 652 Gene3D - 32 112 IPR012677 -
Blo17g00873 652 SUPERFAMILY RNA-binding domain, RBD 210 394 IPR035979 GO:0003676
Blo17g00873 652 SMART rrm2_1 211 283 IPR003954 GO:0003676
Blo17g00873 652 SMART rrm2_1 314 386 IPR003954 GO:0003676
Blo17g00873 652 SMART rrm2_1 120 192 IPR003954 GO:0003676
Blo17g00873 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Blo17g00873 652 CDD RRM4_I_PABPs 312 390 - -
Blo17g00873 652 SUPERFAMILY RNA-binding domain, RBD 36 200 IPR035979 GO:0003676
Blo17g00873 652 CDD RRM2_I_PABPs 117 193 IPR045305 -
Blo17g00873 652 SMART poly_2 567 630 IPR002004 GO:0003723
Blo17g00873 652 Pfam Poly-adenylate binding protein, unique domain 563 627 IPR002004 GO:0003723
Blo17g00873 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Blo17g00873 652 MobiDBLite consensus disorder prediction 473 494 - -
Blo17g00873 652 Gene3D - 551 634 - -
Blo17g00873 652 Gene3D - 113 199 IPR012677 -
Blo17g00873 652 PANTHER POLYADENYLATE-BINDING PROTEIN 25 637 - -
Blo17g00873 652 SUPERFAMILY PABC (PABP) domain 494 647 IPR036053 GO:0003723
Blo17g00873 652 Gene3D - 200 298 IPR012677 -
Blo17g00873 652 Gene3D - 299 403 IPR012677 -
Blo17g00873 652 PANTHER RNA BINDING PROTEIN 25 637 - -
Blo17g00873 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Blo17g00873 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Blo17g00873 652 SMART rrm1_1 120 192 IPR000504 GO:0003723
Blo17g00873 652 SMART rrm1_1 314 386 IPR000504 GO:0003723
Blo17g00873 652 SMART rrm1_1 37 105 IPR000504 GO:0003723
Blo17g00873 652 SMART rrm1_1 211 283 IPR000504 GO:0003723
Blo17g00873 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 109 IPR000504 GO:0003723
Blo17g00873 652 CDD RRM3_I_PABPs 209 288 - -
Blo17g00873 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 37 628 IPR006515 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00191 Blo-Chr1:2582938 Blo17g00873 Blo-Chr17:28792878 2.78E-08 dispersed
Blo07g01371 Blo-Chr7:33840541 Blo17g00873 Blo-Chr17:28792878 4.65E-127 dispersed
Blo09g00527 Blo-Chr9:16476885 Blo17g00873 Blo-Chr17:28792878 6.33E-13 dispersed
Blo13g00581 Blo-Chr13:27928760 Blo17g00873 Blo-Chr17:28792878 1.72E-90 dispersed
Blo17g00873 Blo-Chr17:28792878 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo17g00873 Blo-Chr17:28792878 Blo04g00479 Blo-Chr4:3968617 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00873 K13126 - pvy:116125579 901.738