Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00874 ATGCAAGGGCAAAGGGGTGGTGTTGGCTCATTGCCAGAGACCCTGAATTTCGATCATGGCTCTTCATCAAGTAATGCTGCTGTAGATCAGCAAATTTGTTGGAATAACATGCGGGATCCTTCAGAAAATCGAATACCAGACTATTTATTGTTGCAGCAAAGTGATTTGAACATAACATACGTGAATGCAGTGAGCAGTGAGCAACAAAGCTTGGCCAGATGGTCCATAGGTGAGCCTAGTTCTAGTGGTGCAGCCAGTGAAATGAGCCGTGATGAGCGAAAAGCAGAGCTTGGATGGACCTCGGCTGCTCCTTGTGTGGGAGATCTGCCGAGGCTGGAAGACCGGTGGTTTGGACCATCTAACAATTTCCCACCGGACAATCTCACTATGAATCCAATGTTTATACAAGGTTCCAATTCAGATGCAGTTCCACCAACTCTTAACTTGAATTCGAGTTACATCAGTCACCAAGATGATAGTAATCATGTCACTGAATGCCCTATTATTTTCAAGGCTAGTGGATTAGAAAATGGGGGGATTCCACCCACGCATGGTTCGAATCATTTTGTGTCTCCTCCCGAAAGTGGTGGTTTGTCTCTTGAAGGGAGTGATTGCCGGCCAAGCTCCTCATTGGAGGGTCGTCATTTGTCTTTTAAACGGAAGGCATTTGAAGGGTCTTCTGTTGGTGGAAGCAGTAGCTATTCTCAGCCTACTGAAAACTCTGTTATTCCAGCCCGGTTTAGTGCAGGCAGCAATTTGGTGTTGTCAGCTCCTACAGATCAAGCAAATCAAAGATTGAGACTTGGTGTAAGAGAAGTGATTTCCACTGAACTGTCTGATATAAATGTGGCAGAAACTATGGAAAATGCTCACAGAAACTTCCGTATAAGGATTAGTTCCTCAAATCAGTCAGGTTCTATTTATCCAAACGTGCCACCATCAGGGAGCGTCAGGCATTCTGGGATCTCTTCATCTCAAGAACCTAATAGGCTTCTTCCAGTCAATTATTCTATGAACTTAAGGTCAGCACCAACTACGGACAATGCAACTACTCAAAACCCACCATTTGTTCTCCGCGTTCCAGCTTTGCCTCGAAGTGTGCCATCTTCGAGGGTGAGTGCTGGTTTGAATTCTAGAACCAGTGGTTCATCTGGTCTGGTTGGAAATCTACACGCTATGCAAAGTGAGGATTCAAGCTCAAGAAGCATGGCCAGAATTATATCAGAAAATCCTCTGTTCGCACCAGGGACTGATTCTAGAAATTCAACTCGAAATCCATCTAGTCGCCGTGCAGTGAGTGGAAACTTGAGCATTCCTGTGAGTGTTCCGCCTACATCTCGAACTGGATCCACTATGACAACTCATAGTCCATCTGGCCCTTGGCTTCCTCCTGAGAATCCTCCCGCACCACAATATCCTAGGAGATTGTCGGAAATTGTTCGTCGACAGTTGTTTTCTTCTTCTGGCATGGAGTCTGGTGGTGGCCAGCCAAGTAATTTATCGTCACTGCATTCAGGTTCTTCCTCTGCACATGGTTTACATCTTTCGTCCAGAGCTGGTAACCAGGGGCATCATGCATTGCTCCCCAGGGCAATGGCGTGGATTGAGAGACAAGCTGATGGAGGAATTGGTATTCCTTATTCATTGCGAGCCTTAGCTGCTCCTAGCGAAGGCAGTGGAAGTAATAGACTCGTGTCAGAGATTCGCAACGTCTTAGGTCTCATGCGCCGAGGGGAGAACTTAAACATACGGCTTGAGAATTTTAGGGGTATACATTGGAAATTTCACATTGATGTGATGATCCTAGATCAGTCTGTATTATTTGGGATGGCCGACTTTCACGACCGTCATCGAGACATGCGCCTCGATGTAGATAACATGTCCTACGAGGAGTTGCTGGCTCTAGAAGAACGGATTGGAAATGTAAGCACGGGGGTCTCGGAAGAGACGATTCTGTCTCGTCTAAAACGGCGAAAGTGTTCTCCCTACTTGGGATCTCCTCTGGATGCAGAACCTTGCTGTATTTGTCAAGAGGAATACGTCGAGGGAGAAGATGTGGGGAAGTTAGAATGCGGGCATGATTATCACACCACCTGTATTAAGCAGTGGTTGATGCTCAAGAATTTGTGTCCAATCTGTAAAACTACGGCGTTGCCAACCTGA 2163 46.23 MQGQRGGVGSLPETLNFDHGSSSSNAAVDQQICWNNMRDPSENRIPDYLLLQQSDLNITYVNAVSSEQQSLARWSIGEPSSSGAASEMSRDERKAELGWTSAAPCVGDLPRLEDRWFGPSNNFPPDNLTMNPMFIQGSNSDAVPPTLNLNSSYISHQDDSNHVTECPIIFKASGLENGGIPPTHGSNHFVSPPESGGLSLEGSDCRPSSSLEGRHLSFKRKAFEGSSVGGSSSYSQPTENSVIPARFSAGSNLVLSAPTDQANQRLRLGVREVISTELSDINVAETMENAHRNFRIRISSSNQSGSIYPNVPPSGSVRHSGISSSQEPNRLLPVNYSMNLRSAPTTDNATTQNPPFVLRVPALPRSVPSSRVSAGLNSRTSGSSGLVGNLHAMQSEDSSSRSMARIISENPLFAPGTDSRNSTRNPSSRRAVSGNLSIPVSVPPTSRTGSTMTTHSPSGPWLPPENPPAPQYPRRLSEIVRRQLFSSSGMESGGGQPSNLSSLHSGSSSAHGLHLSSRAGNQGHHALLPRAMAWIERQADGGIGIPYSLRALAAPSEGSGSNRLVSEIRNVLGLMRRGENLNIRLENFRGIHWKFHIDVMILDQSVLFGMADFHDRHRDMRLDVDNMSYEELLALEERIGNVSTGVSEETILSRLKRRKCSPYLGSPLDAEPCCICQEEYVEGEDVGKLECGHDYHTTCIKQWLMLKNLCPICKTTALPT 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28800371 28806172 + BLOR08420 Blo17g00874 73262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00874 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 718 IPR045191 GO:0061630
Blo17g00874 720 MobiDBLite consensus disorder prediction 185 211 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 367 472 - -
Blo17g00874 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 718 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 487 516 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 75 96 - -
Blo17g00874 720 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Blo17g00874 720 SUPERFAMILY RING/U-box 672 717 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 370 406 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 1 24 - -
Blo17g00874 720 MobiDBLite consensus disorder prediction 414 459 - -
Blo17g00874 720 Pfam Ring finger domain 673 714 IPR001841 -
Blo17g00874 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 718 IPR013083 -
Blo17g00874 720 SMART ring_2 673 713 IPR001841 -
Blo17g00874 720 MobiDBLite consensus disorder prediction 487 518 - -
Blo17g00874 720 CDD RING-H2_TTC3 672 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00874 - - - qsu:111994018 713.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00959 Blo-Chr7:28958432 Blo17g00874 Blo-Chr17:28800371 7.94E-34 dispersed
Blo13g00184 Blo-Chr13:7340468 Blo17g00874 Blo-Chr17:28800371 1.56E-26 dispersed
Blo15g00751 Blo-Chr15:25503272 Blo17g00874 Blo-Chr17:28800371 7.95E-56 dispersed
Blo15g00752 Blo-Chr15:25514105 Blo17g00874 Blo-Chr17:28800371 1.64E-25 dispersed
Blo17g00044 Blo-Chr17:288819 Blo17g00874 Blo-Chr17:28800371 2.77E-37 dispersed
Blo17g00874 Blo-Chr17:28800371 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo17g00874 Blo-Chr17:28800371 Blo02g00829 Blo-Chr2:29905024 1.12E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00874 Blo_Chr17 FPKM 1.253968 1.020895 0.624761 0.0 0.409123 0.256523 0.59359 2.283873 1.509481 1.734938