Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00875 ATGGCGGATCTGTACGGAACTTCTCCTTCTTCCACAACTGGTCTTTCCTCCGGCTCTGAAGATTTTTCTTCCTTTTTAAACCAGCATTTCAGTAATTCGTCGTCTCTCTACTCTTATGCTTCGTCTCCTTGCATGTCGTTGAAGGGCAAGTATTCGCGATTGCTTGATGCTCAGTCAGTAGGGCAGCAACTGCCCTCGTTCTCGCAGAAACAGGAGACTACCTCCGCTCCAGGATCTTCGAGCCTGGCGGTTTCCGCATCTGGTTTGAATTTTTCGGATCCTGGAAGTTTCTTCTCGGATGACATCAAAGGAAGAGCAGAAAACGCGTTTTCTTTTGCTAGAGCTGAAGATTGTGACGCCCATGCGTCCTTGAAGAAAGGGAGGTTTTCACCTGAAATTGATCTCGGCGATTTCAGTTGTGACAGCGAGAACGGTGCTGAGGTATCGAAACTTCCGTCAAATCCAATGGCGGCTAGGAGTTCATCCAAGCGAAGCAGAGCTGCAGAAGTTCATAATTTATCAGAGAAAAGGAGGAGAAGAAGGATTAATGAAAAAATGAAAGCCCTGCAGAACCTAATTCCAAATTCTAATAAGACGGATAAGGCTTCCATGCTAGATGACGCAATTGAATATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTATCTATGAGAAATGGATTTAGTCTGCATCCTTCATGCTTACCAGGAAGAGTACTGCAGCCTATGCAATTGCCTCAGTTGGGAATGAACTTTGATTCGGGAAATGCAAGTCCAACTTCCATCAGAGAGTTAGAAACTCTTTTTGCAAATAAAGATTGTCCAATACAGTCTAACTTCAGCCTTTCCAACAAATGTAGTCTCTCCGATCAGCCAGTTGCCATCTCTACTGAAGCAAACAATAGTACTCCAGATAACTCGTTTAGACTTGGACAACTTCAGGCATACTATGGACATTTTAATTTAACCCCTCATTCTGAGGATGTCAGCAGGGATGCCACACCAAAACAACTGGATTGCTCTCAGACTGGAAAACACTCCAAAGAAAATGCTTTATAG 1059 43.63 MADLYGTSPSSTTGLSSGSEDFSSFLNQHFSNSSSLYSYASSPCMSLKGKYSRLLDAQSVGQQLPSFSQKQETTSAPGSSSLAVSASGLNFSDPGSFFSDDIKGRAENAFSFARAEDCDAHASLKKGRFSPEIDLGDFSCDSENGAEVSKLPSNPMAARSSSKRSRAAEVHNLSEKRRRRRINEKMKALQNLIPNSNKTDKASMLDDAIEYLKQLQLQVQMLSMRNGFSLHPSCLPGRVLQPMQLPQLGMNFDSGNASPTSIRELETLFANKDCPIQSNFSLSNKCSLSDQPVAISTEANNSTPDNSFRLGQLQAYYGHFNLTPHSEDVSRDATPKQLDCSQTGKHSKENAL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 28856763 28858886 + BLOR08421 Blo17g00875 73263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00875 352 MobiDBLite consensus disorder prediction 335 352 - -
Blo17g00875 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Blo17g00875 352 MobiDBLite consensus disorder prediction 146 161 - -
Blo17g00875 352 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Blo17g00875 352 PANTHER TRANSCRIPTION FACTOR SPATULA-LIKE ISOFORM X1 1 334 - -
Blo17g00875 352 SMART finulus 172 221 IPR011598 GO:0046983
Blo17g00875 352 Gene3D - 161 226 IPR036638 GO:0046983
Blo17g00875 352 MobiDBLite consensus disorder prediction 326 352 - -
Blo17g00875 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 226 IPR036638 GO:0046983
Blo17g00875 352 Coils Coil 172 192 - -
Blo17g00875 352 CDD bHLH_AtPIF_like 166 228 - -
Blo17g00875 352 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 334 IPR031066 -
Blo17g00875 352 MobiDBLite consensus disorder prediction 145 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00875 - - - csv:105434642 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00900 Blo-Chr10:27960491 Blo17g00875 Blo-Chr17:28856763 1.78E-26 dispersed
Blo15g00325 Blo-Chr15:3768687 Blo17g00875 Blo-Chr17:28856763 5.06E-22 dispersed
Blo17g00875 Blo-Chr17:28856763 Blo01g00628 Blo-Chr1:7078735 2.41E-20 dispersed
Blo17g00875 Blo-Chr17:28856763 Blo04g01053 Blo-Chr4:14865246 4.05E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g744 . . . . . . . . Cmo05g00172 Cmo12g00502 . . . Car12g00514 Sed10g1234 . Cpe07g00491 Bhi04g00369 Tan02g1798 Cmetu03g0637 . Hepe08g1296 . Lcy13g2092 . . . . . . . Cone4ag1587 Cone7ag1362 . . . . . Cme03g02063 Blo17g00875 . . . . . . Bma05g00041 . . . Cma12g00559 Cma05g00174 Car05g00147 . Cpe11g00143 . . . . . . . . . . . . . . . . Csa02g01934 Chy03g01556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007940 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13549 PF00010 HLH 6.10E-14 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00875 Blo_Chr17 FPKM 41.785313 44.310642 22.029812 19.643404 12.328577 12.38037 9.900818 25.842394 25.9629 26.297485