Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00892 ATGAACTTTCATGTTCTCAAGAGTAGGACAATAATATCGGGTATTGGAACTGACTTGGGTAAGGGAGATGGAGATGATACGGACATAAGTAGTGATGAATTGTCCAAACTCGGAAGAGGAAAAGAAACTCTAAGATGCCTGGCTTTGGCTTTGAAGTGGATGCCTACGGATCAACAGAGTTTATCTATTGACGACGAGAAAGAATTTACATTCATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGAGGAAGTCAGAAGTGCTATGCTTTCATGCATGACTGCTGGAATACGGGTTATAGTGGTCACTGGTGATAACAAGTCAACAGCTGAATCCATCTGCCGCCAGATTGGTGGTCCATTCGATCATATCAATCTTCCAGGACATTCTTATACTGCTTCTGAGTTTGAAGAACTACCTTCATTGCAGCAAACAGTGGCAGTACAACATATGGCGCTGTTCAGCAGGGTTGAACCTTCTCATAAGAGAATGCTGGTTGAGGCTTTACAACATCAAAATGAAGTGGTTGCGATGACTGGTGATGGCGTCAATGATGCTCCTGCACTAAAAAAAGCTGACATAGGGATCGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCGGATATGGTTTTGGCAGATGACAATTTTGCTACTATTGTCGCGGCCGTTGCTGAGGGACGGGCTATATATAATAACACGAAGCAGTTTATCAGATACATGATCTCATCGAACATTGGTGAAGTGGTTTGTATATTTGTGGCAGCTGTACTTGGAATTCCAGAAACCCTAGCTCCTGTTCAGCTTCTCTGGGTTAATTTGGTTACTGATGGATTACCTGCCACTGCAATAGGATTTAATAAGCAAGACTCTGATGTAATGAAGGTTAAACCACGTAAGGTGAATGAAGCTGTTGTTACTGGGTGGTTGTTCTTTCGTTACTTGGTTATTGGAGCCTATGTCGGCCTTGCCACTATTGCAGGTTTCATTTGGTGGTTTGTTTACTCTGATAGTGGTCCTCAACTACCATATAGTGAATTGATGAATTTTGACACTTGCTCAGCAAGGGAGACGAGTTATCCATGTAGTGTATTCGATGATAGGCGTCCATCAACTGTTTCAATGACTGTCCTTGTTGTTGTTGAAATGTTTAATGCTTTGAATAATTTGAGTGAAAACCAATCTATTATTGTCATCCCCCCCTGGAGTAATTTATGGCTTGTAGCTTCAATTATCCTTACAATGATTCTTCACGGACTCATTTTATATGTACAACCGCTTTCTGTTCTTTTCTCTGTTACCCCACTATCTTGGGCTGAGTGGACTGTTGTCTTGTATCTTTCATTTCCTCGTTGGTATTGGGGAAGAAGATTACAGACCCATCATGTTATTGGTGATGACAATGGTGGTGGCGTTGCAATCGTGTTGAAGGAGAAAGGAGAAAGGAGAAAGGAGAAAGGAGAAATGGAGAAGACCTTTTTGACCAGAGAAAGGGATGGGATAGAGAGAGAAAGAAAAAGTAGGCAAGAGGTTAGAAAATATGTCCCATTTGGTGGACGTTGTTGTTTCTGA 1575 42.1 MNFHVLKSRTIISGIGTDLGKGDGDDTDISSDELSKLGRGKETLRCLALALKWMPTDQQSLSIDDEKEFTFIGLVGMLDPPREEVRSAMLSCMTAGIRVIVVTGDNKSTAESICRQIGGPFDHINLPGHSYTASEFEELPSLQQTVAVQHMALFSRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFVYSDSGPQLPYSELMNFDTCSARETSYPCSVFDDRRPSTVSMTVLVVVEMFNALNNLSENQSIIVIPPWSNLWLVASIILTMILHGLILYVQPLSVLFSVTPLSWAEWTVVLYLSFPRWYWGRRLQTHHVIGDDNGGGVAIVLKEKGERRKEKGEMEKTFLTRERDGIERERKSRQEVRKYVPFGGRCCF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29451457 29466870 + BLOR08438 Blo17g00892 73280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00892 524 Gene3D - 30 80 IPR023299 GO:0000166
Blo17g00892 524 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 149 267 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Blo17g00892 524 Pfam Cation transporting ATPase, C-terminus 263 456 IPR006068 -
Blo17g00892 524 Gene3D - 81 223 IPR023214 -
Blo17g00892 524 PANTHER CALCIUM-TRANSPORTING ATPASE 36 451 - -
Blo17g00892 524 SUPERFAMILY Calcium ATPase, transmembrane domain M 228 455 IPR023298 -
Blo17g00892 524 PRINTS P-type cation-transporting ATPase superfamily signature 179 198 - -
Blo17g00892 524 PRINTS P-type cation-transporting ATPase superfamily signature 95 105 - -
Blo17g00892 524 PRINTS P-type cation-transporting ATPase superfamily signature 73 84 - -
Blo17g00892 524 PRINTS P-type cation-transporting ATPase superfamily signature 202 214 - -
Blo17g00892 524 SUPERFAMILY HAD-like 50 282 IPR036412 -
Blo17g00892 524 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 36 451 - -
Blo17g00892 524 Gene3D - 224 452 - -
Blo17g00892 524 Pfam haloacid dehalogenase-like hydrolase 73 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00140 Blo-Chr14:1007959 Blo17g00892 Blo-Chr17:29451457 1.86E-137 dispersed
Blo17g00892 Blo-Chr17:29451457 Blo16g00829 Blo-Chr16:34712797 3.40E-56 dispersed
Blo17g00892 Blo-Chr17:29451457 Blo13g01094 Blo-Chr13:33078654 7.01E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00892 K05853 - gmx:100783509 749.584