Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00893 ATGTTCCATCCCCCTAGCCGGAGGAACCGGCAAGTTCTAGGCATCGACGACGGAGGGCATCTGCTAGATCTGGACACTGCCGTGAAAGATGGGGTTTTGGGTGGTTCATGCGGTGTCTCAATCTGCGACAATGGCTTCTCTAAGAAAATAGATCTGAAGGAAATGATAGAGGAGCTGGAAGCCATAGAACTTCCCTCTGTATTCATCTGTCCAATCTCTTTAGAGCCCATGACAGACCCAGTCACCCTCTGCACTGGCCAAACTTATGAAAGATCAAACATTCTAAAATGGCTGTCCTTGGGCCATTTTACGTGCCCCACGACAATGCAAGAGCTTTGGGATGACTCAATCACGCCCAATAGAACCCTTTACCAGTTGATACTAACCTGGTTTTCTCAGAAGTACTCCGCCATGAAAAAGAAGTCGGATGATGTGCAGGGGAGGGCCATGGAGCTTCTGGAGACGTTGAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCTCTGAAAGAACTCAGGCGACTCGTCTCTGCAAATGCTTCTGCCAAGAAGACCGTGGTCGACAATGGCGGCGTTGGCTTGATTTCTTCTCTTCTGGGTTCTTTTACTTCTCACGCAGTTGGGTCAGAATCTGTTGGGATTCTTGTAAATTTGGAGATCGATTCTGAATCCAAGACGAATCTGATTCAACCCTCGAAAATATCTTTGATAGTTGATATACTCAACGAAGGATCCATCGAAACGAAGATCAACTGCACTAAATTCATTGAAATTTTGATCAAAGGCAGTGATTTTAGAACAGAAACCATTTCAAGATTGAGTCTCCTGGTTGGATTGCTGCGATTAGTGAAGGACAAAAGGCACCCTTCTGGAATTTTGGCTGGACTTAGTCTTCTCAAAACTATTTGTGGGCATGAAGCAGTAAATAACTCATTTTTAAGCGTCGGATTGGTACGAACTCTAGTGGACCTTCTGCCATCTTTGAGTACAGAATGTTCAGAGTTAGCTCTTTATGTTCTTGAATCAGTCTCTTACCTTCCAGAAGGAAAATTTTGCCTAAAAGATTGTCCGAATACGATATCAAATATCGTGCCGTTGATGATGAGAGTCTCGGAGACTTGTACTCGGCTTTCGATGGCGATCTTACTGGCCATTTGTAAGGTTGGTCCTGAAGAATTTGCTTCACTTGCAGTGGAGGCAGGCTTGGCAGCTAAGCTTCTTCTTGTTATCCAAAGTGGGTGTAATCCTGCTCTAAAGCAGCAATCTTCAGCTCTGCTGAAACTGTGCAGCCTGAATTACACACCCACTCTCTTCATTTCCAAGTGTAATCTCACAAGAACTATACAATAA 1347 44.69 MFHPPSRRNRQVLGIDDGGHLLDLDTAVKDGVLGGSCGVSICDNGFSKKIDLKEMIEELEAIELPSVFICPISLEPMTDPVTLCTGQTYERSNILKWLSLGHFTCPTTMQELWDDSITPNRTLYQLILTWFSQKYSAMKKKSDDVQGRAMELLETLKKVKGQARVQALKELRRLVSANASAKKTVVDNGGVGLISSLLGSFTSHAVGSESVGILVNLEIDSESKTNLIQPSKISLIVDILNEGSIETKINCTKFIEILIKGSDFRTETISRLSLLVGLLRLVKDKRHPSGILAGLSLLKTICGHEAVNNSFLSVGLVRTLVDLLPSLSTECSELALYVLESVSYLPEGKFCLKDCPNTISNIVPLMMRVSETCTRLSMAILLAICKVGPEEFASLAVEAGLAAKLLLVIQSGCNPALKQQSSALLKLCSLNYTPTLFISKCNLTRTIQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29467071 29468417 + BLOR08439 Blo17g00893 73281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00893 448 SUPERFAMILY RING/U-box 58 134 - -
Blo17g00893 448 PANTHER WDSAM1 PROTEIN 38 447 IPR045185 GO:0061630
Blo17g00893 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 447 - -
Blo17g00893 448 SMART Ubox_2 67 130 IPR003613 GO:0004842|GO:0016567
Blo17g00893 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 136 IPR013083 -
Blo17g00893 448 Gene3D - 137 442 IPR011989 -
Blo17g00893 448 SUPERFAMILY ARM repeat 152 347 IPR016024 -
Blo17g00893 448 Pfam U-box domain 65 134 IPR003613 GO:0004842|GO:0016567
Blo17g00893 448 CDD RING-Ubox_PUB 68 110 IPR045210 -
Blo17g00893 448 ProSiteProfiles U-box domain profile. 63 137 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00339 Blo-Chr16:9754998 Blo17g00893 Blo-Chr17:29467071 0 dispersed
Blo17g00893 Blo-Chr17:29467071 Blo03g01130 Blo-Chr3:37761378 2.89E-28 dispersed
Blo17g00893 Blo-Chr17:29467071 Blo04g01095 Blo-Chr4:16723248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00893 - - vvi:100255725 648.662