Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00895 ATGGAGAAGATCAGCGTGGCCGTGCGAGTGAGACCCCCTACATCGGAAGACTCCTCCCGAGGAACGTATTGGAAAGTCGATGGCAATTGCATTTCACTCCACAAAGCTCTTGGCTCCGCTATCTCCGGCCTTTCCTACGCTTTTGACCACGTACTCGATGAAAGGTGCACAAATGCTACGATTTACGAGCTTCTTACTAAAGATATAATACAAGCAGCAGTTGAAGGATTCAATGGAACTGCTTTTGCTTATGGGCAGACCAGCAGTGGCAAGACTTTCACCATGAATGGTTCTGAAACTGATCCTGGAATCATTCATCGTGCAGTTAAAGATATATTTGAAATGATTAAAATGATGTCAGATCGAGAGTTTCTGATCCGAGTTTCCTACATGGAAATTTACAATGAAGAAATTATTGATCTTTTCGCTGTAGAAAACCAAAAATTGCAAATTCATGAAAGCTTGGAGCGTGGAATATATGTTGCAGGGCTGCGAGAAGAAATTGTCAATGATGCAGAACAAGTTTTAAAGCTTATCAGAACGGGGGAAGTGAATAGACACTTTGGTGAAACTAATATGAATGTCAAGAGTAGCAGATCCCACACAATTTTTAGAATGGTTATTGAGAGCAAGGGGAAGGAGACCAGTTCTTGCAATGACTATTCAAGTACAGATGTCGTTCGCGTTTCAGTATTGAATTTGGTAGATTTAGCTGGATCTGAACGGATAGCTAAAACCGGTGCTGGAGGAGTACGTTTGAAGGAAGGAAAGCACATAAATAAGAGCTTAATGGTTCTTGGAAATGTAATCAACAAACTAAGTGATGGTGCGAGGCAAAGGGGTCATGTTCCTTATCGAGATAGCAAGCTAACTCGTATACTTCAACCTGCTCTTGGTGGTAATGCCAAAACTTCAATAATATGTACTGTAGCTCCAGAAGAGATACACACAGAGGAAACAAAGGGAACTCTCCAATTTGCAAGCCGAGCCAAGCACATCACTAATTGTGTCCAAGTGAATGAGATTTTGACAGATACAGCCTTATTAAAACGCCAAAAACTGGAGATAGAAGGACTAAGGAAGAAACTTGAGGGATCTCACACTGAGGTGCTTGAGCAAGAGATTTTAAAATTGAGGAATGATTTGTTGAAGTATGAAGTAGAGCGTGAAAAGCTAGAAATGGAACTTCAAGAGGAGAAGAAGAAATGGAACCTCAGCAATCTTGTTACAAATTCAGAATCTGATCATAGCTGTAGTCGAGTAAGATCTAATAGCCTTTATTACAGTGATAATAAATGTCAAGGAGATGCTTTTACAACACCTTGCTTCAAGAGTGCTCCAGATGCTTTTGTTGTAAAGCGGTCTAATAATCATACGATTCCTTATTGTAGCCCCATTTCAGAAACCTTTAGTAATATAGCTGATGAAGATACATGGTTAAAGATGAATAATGGTCACATGGTTGATCTTGATTTTCTTCAGACGACTCCAGCTAGAAAAGTTCAATCTTTTCCATCAAATGAAAAACATCCTGTCTTTTTAAGTGTTAGCTCTGAACAAGAAATTCAAAATCTTCAGAGACAGCTAGAGCTCGTCATTTTGGAGAAAAATGAACTTGAGAAAAAACACGTGGAATTACTTTTGAGCAGTCAGATAGTGGGAGAAAAATCCAATTTTCAACAAAAACCGATAAATCTTCAAGAAACCTCACACAGGCTATGCGAGTCCTTGAAGACCTGCAAAGATATATTTGACGATGTGTTCTCAACTACCCAGAGCCTGGCAGCTGACGGGAAATCATCATCTGCTAAATTTCTTTCGTGTACAAGTGAAATATGTGAGAGCATTTTTACAGCTCTGGAAGCTCATTTCGCTGTGGCTATGGGTGATCAGTTACATTTCAAAGGGAGTGCATGTTTACTACAAGAAGAAAATAAGTTATTTCGCGAGAGGTTGAAAAGCGCAATTACAACCATAATAGCAGAAACATCAACAATTAGTTGCGACTGCAGTAAGACGGAGAAGGTTTTGGACATTGAAGATCGGAGAAGGAAAGATCTTGAAGAAGGAGTTAAGCAATTGGTCTTGGCATTTACTCGTAGACAGAAAATGCTTACTTCTTTAAGCAGAGAAGTCACTTCCAAAGCAGAAAAACTGAGAGCCCAAAAGCCAATTTCACAGCTCAACTCTCGTGAGTGCTAA 2202 39.74 MEKISVAVRVRPPTSEDSSRGTYWKVDGNCISLHKALGSAISGLSYAFDHVLDERCTNATIYELLTKDIIQAAVEGFNGTAFAYGQTSSGKTFTMNGSETDPGIIHRAVKDIFEMIKMMSDREFLIRVSYMEIYNEEIIDLFAVENQKLQIHESLERGIYVAGLREEIVNDAEQVLKLIRTGEVNRHFGETNMNVKSSRSHTIFRMVIESKGKETSSCNDYSSTDVVRVSVLNLVDLAGSERIAKTGAGGVRLKEGKHINKSLMVLGNVINKLSDGARQRGHVPYRDSKLTRILQPALGGNAKTSIICTVAPEEIHTEETKGTLQFASRAKHITNCVQVNEILTDTALLKRQKLEIEGLRKKLEGSHTEVLEQEILKLRNDLLKYEVEREKLEMELQEEKKKWNLSNLVTNSESDHSCSRVRSNSLYYSDNKCQGDAFTTPCFKSAPDAFVVKRSNNHTIPYCSPISETFSNIADEDTWLKMNNGHMVDLDFLQTTPARKVQSFPSNEKHPVFLSVSSEQEIQNLQRQLELVILEKNELEKKHVELLLSSQIVGEKSNFQQKPINLQETSHRLCESLKTCKDIFDDVFSTTQSLAADGKSSSAKFLSCTSEICESIFTALEAHFAVAMGDQLHFKGSACLLQEENKLFRERLKSAITTIIAETSTISCDCSKTEKVLDIEDRRRKDLEEGVKQLVLAFTRRQKMLTSLSREVTSKAEKLRAQKPISQLNSREC 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29539295 29544075 + BLOR08441 Blo17g00895 73283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00895 733 PANTHER CENTROMERE PROTEIN E 2 693 - -
Blo17g00895 733 Coils Coil 515 542 - -
Blo17g00895 733 Gene3D Kinesin motor domain 1 364 IPR036961 -
Blo17g00895 733 ProSitePatterns Kinesin motor domain signature. 230 241 IPR019821 GO:0003777|GO:0005524|GO:0007018
Blo17g00895 733 ProSiteProfiles Kinesin motor domain profile. 3 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 Coils Coil 349 402 - -
Blo17g00895 733 CDD KISc_CENP_E 3 333 - -
Blo17g00895 733 SMART kinesin_4 1 341 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 Pfam Kinesin motor domain 9 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 PRINTS Kinesin heavy chain signature 231 249 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 PRINTS Kinesin heavy chain signature 191 208 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 PRINTS Kinesin heavy chain signature 76 97 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo17g00895 733 PANTHER CENTROMERE PROTEIN E 2 693 - -
Blo17g00895 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 365 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00895 K11498 CENPE; centromeric protein E - jre:109021299 883.634
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01519 Blo17g00895 CCT
Blo01g01519 Blo17g00895 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01275 Blo-Chr1:48668411 Blo17g00895 Blo-Chr17:29539295 1.32E-47 dispersed
Blo11g00011 Blo-Chr11:95635 Blo17g00895 Blo-Chr17:29539295 3.09E-71 dispersed
Blo17g00172 Blo-Chr17:1749030 Blo17g00895 Blo-Chr17:29539295 3.16E-91 dispersed
Blo17g00895 Blo-Chr17:29539295 Blo18g00788 Blo-Chr18:22760359 2.33E-85 dispersed
Blo19g00296 Blo-Chr19:18604936 Blo17g00895 Blo-Chr17:29539295 2.73E-53 dispersed
Blo17g00895 Blo-Chr17:29539295 Blo04g00533 Blo-Chr4:4585298 5.58E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00895 Blo_Chr17 FPKM 0.524372 0.0 1.338097 1.014421 1.764227 2.564794 2.498347 2.487305 2.42702 2.212104