Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00896 ATGGATTTTGGAGTTGTGGGTTTGGATGGGTTAGTGGGTTCCGAAACTGGGTTCGTCTCTCTTGCCTCAGATCCTGAAACAAAGCAAAAGTTGTACGGATCAGCGCTAGGGTTTCGATCTGCCACTGATGAAGATGACTCGAGGAGCTCCAAACTGTCCAAGACTGATGATTTCTCATCCTCCAAGATCGCTTTACTGAGATCTAATAATATTTTCTCATTCTCTGACGCTCAAGAACATCAGCAAATGCTGAGTTTCTCTTCTCCCAAACCAGAATCTCTTTTAGTGGAGAGGAGTTGCCCGACCAACTCTATTCCTTACTTTCACTCCACGTCTGCTTCTGCCAGAAACACAGGCTACAACAGTGGAAACTTAAACTGCGGAAGCATGTATGGCGGTTTAACTGGTATCAGAGGCCCTTTCACTCCATCTCAATGGATGGAGCTTGAGCATCAGGCCTTGATTTATAAATACATTGCTGCAAATGTTGCTGTGCCTTCTAATCTGCTCATACCCATCAAAAAGGCTATCGATTCCGCTGGTTTGTCTGGTTTTCCGCCGGCTGTTCTGCGGCCCAATGCATTGGGATGGGGCACTTTTCATCTGGGATTCTCCGGCAACTCAGATCCGGAACCAGGGAGGTGTCGCCGGACCGACGGGAAGAAATGGCGGTGCGCCAGAGATGCTGTGGCCGATCAGAAATACTGCGAGCGGCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCAGGCCAGTCCGTTGCCGGAATTTCCAACAATAACATCACCACCACCTCAAAGCTGGTGTCTTCCTCAGCAGCCTCTGTGGTGGATTCCGGCGCCGGTATTCCCAACCAACTCGTCAAGAACTTGCCCCCTACTTCATTCCGCCCTTCTGGTTCTACCCACATAAACAGGATGGTGATGGAGAAAGATAATGGAGGAGGTAGAATGCAAAATGCGTCATGTTTATCGGCTCTATCATCTCCCGAAAATGCTCTCAAGTCCAAACAAACCTCGTTCTTAATTCCAAAACCGCACATTTCATACGAAGCATCTCCTCGAACTGGGTTTGGATTAGTCTCTGGCGATTTCCTTCTCAACCCATTATCACATCAGAACTCATTGACAACCTGCAAAAGCTTCGGCGGGGAAGGAGAAACCGAGTCACGGCTTCACCATTTTCTGTGGCCTAAGAATCAGCCCGATCGATCTGTCCTTTCCTGGTCTGGTTTCGATGTACAATCAGATAGAACCCAGCTGTCAATTTCAACTCCCATGGATACATCAGACCTCACATCGCCTTCGTCCTCTGCCCCGCCTACCAACGATAAACTCACTCTCTCACCCCTCAGACTGTCGAAAGATTTCGACCCGATTCAAATGGGGCTAGGAGTGAGAAATGCGGTGAACGAAAGCGGGAGTAGGCAAGCGAATTGGATTCCGATTTCTTGGGAAAGCTCCATGGGAGGACCGCTGGGGGAGGTCTTGAATCACACGAACAACAATGGCGGCGGGGAGTGCTCAGCCCTAAACCTGATGACGGAGGGATGGGAGAATAGCCCCCCGATAGGGTCATCCCCCACAGGGGTCCTACAGAAGACGTCATTTGGGTCAGTTTCGACGAGTAGTACAGGAAGCAGTCCTCGAGCAGAGAACAACAGGGTCCATGACGGGGGAAGCCTCTGCAACGATCTTCTGGGCCAACTTTTATGA 1731 50.14 MDFGVVGLDGLVGSETGFVSLASDPETKQKLYGSALGFRSATDEDDSRSSKLSKTDDFSSSKIALLRSNNIFSFSDAQEHQQMLSFSSPKPESLLVERSCPTNSIPYFHSTSASARNTGYNSGNLNCGSMYGGLTGIRGPFTPSQWMELEHQALIYKYIAANVAVPSNLLIPIKKAIDSAGLSGFPPAVLRPNALGWGTFHLGFSGNSDPEPGRCRRTDGKKWRCARDAVADQKYCERHMNRGRHRSRKPVEGQAGQSVAGISNNNITTTSKLVSSSAASVVDSGAGIPNQLVKNLPPTSFRPSGSTHINRMVMEKDNGGGRMQNASCLSALSSPENALKSKQTSFLIPKPHISYEASPRTGFGLVSGDFLLNPLSHQNSLTTCKSFGGEGETESRLHHFLWPKNQPDRSVLSWSGFDVQSDRTQLSISTPMDTSDLTSPSSSAPPTNDKLTLSPLRLSKDFDPIQMGLGVRNAVNESGSRQANWIPISWESSMGGPLGEVLNHTNNNGGGECSALNLMTEGWENSPPIGSSPTGVLQKTSFGSVSTSSTGSSPRAENNRVHDGGSLCNDLLGQLL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29561917 29564492 - BLOR08442 Blo17g00896 73284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00896 576 PANTHER - 38 563 IPR031137 GO:0005634|GO:0006351|GO:0032502
Blo17g00896 576 MobiDBLite consensus disorder prediction 522 559 - -
Blo17g00896 576 Pfam WRC 210 252 IPR014977 -
Blo17g00896 576 MobiDBLite consensus disorder prediction 522 564 - -
Blo17g00896 576 SMART QLQ_2 139 175 IPR014978 GO:0005524|GO:0005634|GO:0006355
Blo17g00896 576 MobiDBLite consensus disorder prediction 424 453 - -
Blo17g00896 576 ProSiteProfiles WRC domain profile. 209 253 IPR014977 -
Blo17g00896 576 PANTHER GROWTH-REGULATING FACTOR 9 38 563 - -
Blo17g00896 576 ProSiteProfiles QLQ domain profile. 140 175 IPR014978 GO:0005524|GO:0005634|GO:0006355
Blo17g00896 576 Pfam QLQ 140 173 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00896 - - - vvi:100260890 672.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01516 Blo17g00896 CCT
Blo01g01516 Blo17g00896 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00333 Blo-Chr16:9300878 Blo17g00896 Blo-Chr17:29561917 1.27E-106 dispersed
Blo17g00896 Blo-Chr17:29561917 Blo18g00727 Blo-Chr18:18767842 0 dispersed
Blo01g01488 Blo-Chr1:54322892 Blo17g00896 Blo-Chr17:29561917 4.97E-98 wgd
Blo12g00996 Blo-Chr12:27982827 Blo17g00896 Blo-Chr17:29561917 1.14E-117 wgd
Blo17g00896 Blo-Chr17:29561917 Blo04g01099 Blo-Chr4:17065270 1.82E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13550 PF08879 WRC 4.90E-21 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00896 Blo_Chr17 FPKM 96.211166 104.589905 29.71228 26.149851 19.083696 18.847258 20.327375 78.113258 78.192596 76.2696