Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00908 ATGTCGGGATCGGAAACAGAAGTTATTAGCAGTAGAGAACCTTTCAGCGTGGGCCTCCAGAAGAGTCCACTGCACCCACAGTCGAACTTGTGCTTTGCTTTCAGCGGCGACGGAACTGCCGTCTTCAAGCCAGTCCCCACTATCTCACCTTCCTACCAGAACCCCGGCTCTGGATTCGCCGGGGTTGATGGATCCACCGGTGGGACTGGGGCACATGTTTCTCATGGGCTTGGCATGATAATGGGCGGCGAACCAACAAAGAGAAAACGGGGTAGGCCCAGGAAGTATGGACCAGATGGTAGTATTTCGTTAGTTCTCAGTTCTGCTCCGCCCTCCGCCTCAGCGACTCAGGCAGGTGGTGACTTTTCTCCTTCCCCGACTGGGCCCCCTGCTTCCGGGGGAGTAGGCTCGCTCACGTCTGCCAAGAAGGCTAGGGGCAGACCGCCTGGTTCTCGCGGAAAGCAGCAAGCTTTGGGCTCAACTGGTGTTGGGTTTACACCCCATGTCATCACTGTCAAAGCTGGAGAGGATGTATCCTCAAAAATAATGTCCTTTTCCCAGAGTGGTCCTAGGGCTGTCTGTATCCTATCAGCCAATGGAGCCATTTCCAATGTCACTTTACGCCAGCCAGGCACGTTTGGAGGAACTGTTACTTACGAGGGACGATACGAAATTTTGTCACTCTCTGGTTCATTTCTCCTGGACGAAGAAGGTGGTCAGAGGAGCAGAACTGGGGGTTTGAGTGTGTCGCTATGCGGTCCAGATGGCCGCGTCTTGGGTGGCAGCGTGGCTGGACTTGTAACGGCTGCATCCTCTGTTCAGGTGGTGGTGGGTAGCTTCATTGCAGATGGTAGGAAAGAATCAAAGTCCACCCAACAAGGGGAAAGGATAGGTGGGCCACCAAGAGTGGAGCCGATTGATGGTCAGGGCGGTGGTGATATTGATCCAACCGGAGGCAGCAGTCCACAATCACGAGGGAGTCTGAGCGAGTCCTCAGGGAGTCCACCATATCAGAGCTCAGGAGCTTGCCATAATACTAACTCGCACGGAATGCCGTGGAAATAG 1065 54.55 MSGSETEVISSREPFSVGLQKSPLHPQSNLCFAFSGDGTAVFKPVPTISPSYQNPGSGFAGVDGSTGGTGAHVSHGLGMIMGGEPTKRKRGRPRKYGPDGSISLVLSSAPPSASATQAGGDFSPSPTGPPASGGVGSLTSAKKARGRPPGSRGKQQALGSTGVGFTPHVITVKAGEDVSSKIMSFSQSGPRAVCILSANGAISNVTLRQPGTFGGTVTYEGRYEILSLSGSFLLDEEGGQRSRTGGLSVSLCGPDGRVLGGSVAGLVTAASSVQVVVGSFIADGRKESKSTQQGERIGGPPRVEPIDGQGGGDIDPTGGSSPQSRGSLSESSGSPPYQSSGACHNTNSHGMPWK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29889996 29891897 - BLOR08454 Blo17g00908 73296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00908 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 11 352 - -
Blo17g00908 354 MobiDBLite consensus disorder prediction 59 162 - -
Blo17g00908 354 MobiDBLite consensus disorder prediction 105 123 - -
Blo17g00908 354 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Blo17g00908 354 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Blo17g00908 354 MobiDBLite consensus disorder prediction 285 354 - -
Blo17g00908 354 CDD DUF296 166 280 IPR005175 -
Blo17g00908 354 Gene3D - 167 295 - -
Blo17g00908 354 ProSiteProfiles PPC domain profile profile. 161 301 IPR005175 -
Blo17g00908 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 352 IPR039605 GO:0003680
Blo17g00908 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 282 - -
Blo17g00908 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 280 IPR005175 -
Blo17g00908 354 MobiDBLite consensus disorder prediction 316 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01211 Blo-Chr1:45522548 Blo17g00908 Blo-Chr17:29889996 1.11E-32 dispersed
Blo02g00285 Blo-Chr2:2755699 Blo17g00908 Blo-Chr17:29889996 9.77E-16 dispersed
Blo03g00838 Blo-Chr3:34108482 Blo17g00908 Blo-Chr17:29889996 7.48E-64 dispersed
Blo12g00844 Blo-Chr12:26720425 Blo17g00908 Blo-Chr17:29889996 6.35E-37 dispersed
Blo17g00908 Blo-Chr17:29889996 Blo19g00178 Blo-Chr19:7602466 2.53E-66 dispersed
Blo17g00908 Blo-Chr17:29889996 Blo16g00434 Blo-Chr16:17141839 1.18E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00908 - - vvi:100263332 405.986