Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00911 ATGGAGACCACATCCACCAAGCCTCTATTTATGAGTTACGTGCCAAAGCCTCAAACCATGGGAAGCGCGTCAACCAAGCCTCTAACCATGGGGGAACAATCCGCCCAAGCCTCTAACCATGGGAAGCACGCGATCATGGCGGAGCACCTTGCTTCAATCTTCGGGACTGAGAAGGACCGCGTTAACTGCCCTTTCTATTTCAAGATCGGTGCTTGCCGCCACGGTGATCGCTGCTCCCGCCTCCACAACCGCCCCACCATTTCCCCCACTATCCTTCTCTCCAACATGTACCAGCGTCCCGACATGATCACCCCTGGTGTTGATGCTCAAGGTCAGCCCATCGACCCCCGTAAGATCCAGGAACACTTCGAAGATTTCTACGAGGACATATTTGAAGAACTCAACAAGTTTGGCGAGATTGAGAATCTCAATATATGTGATAATCTAGCTGACCATATGATCGGTAACGTCTACGTCCAGTTCAAGGAGGAGGACCAGGCTGCCTCCGCTCTCCAGGCTCTGCAGGGTAGATTTTACTCGGGCCGACCTATTATTGCCGATTTTTCACCGGTCACCGATTTTCGTGAAGCTACCTGCCGCCAATACGAGGAAAACAATTGCAATCGAGGTGGGTACTGCAACTTCATGCACGTGAAGCAGATCGGGCGGGACTTGAGGAGGAAACTCTTTGGAAGATACAGGGGATACAGAATAAGCAGGAGCAGGAGCAGGAGCCGAAGTGCGAGCCCACGCCGCCACAGAAGAGAGCCCGATAGGCGCGAGAGGGAATTCAGAGATCGTGATCATCGTGGGGGAAGACACAGTAGGGACGAGAATGACAGAAATGGGGGCAGGAGAAGACGGAGCAGAAGCCCTGGGAGGGAAGGGAGGGAAGGGAGCGAGGAGCGCCGAGCTAGGATTGAACAGTGGAACCGAGAAAAAGAAGAAAAGCACTGA 957 53.4 METTSTKPLFMSYVPKPQTMGSASTKPLTMGEQSAQASNHGKHAIMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELNKFGEIENLNICDNLADHMIGNVYVQFKEEDQAASALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKQIGRDLRRKLFGRYRGYRISRSRSRSRSASPRRHRREPDRREREFRDRDHRGGRHSRDENDRNGGRRRRSRSPGREGREGSEERRARIEQWNREKEEKH 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29959235 29961663 + BLOR08457 Blo17g00911 73299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00911 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 184 IPR000504 GO:0003723
Blo17g00911 318 MobiDBLite consensus disorder prediction 239 318 - -
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 63 82 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 82 102 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 120 135 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 210 222 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 148 170 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 PRINTS U2 auxiliary factor small subunit signature 175 199 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 SMART c3hfinal6 193 219 IPR000571 GO:0046872
Blo17g00911 318 SMART c3hfinal6 58 84 IPR000571 GO:0046872
Blo17g00911 318 ProSiteProfiles Zinc finger C3H1-type profile. 193 220 IPR000571 GO:0046872
Blo17g00911 318 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 46 317 - -
Blo17g00911 318 CDD RRM_U2AF35B 89 190 - -
Blo17g00911 318 MobiDBLite consensus disorder prediction 1 26 - -
Blo17g00911 318 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 46 317 IPR009145 GO:0000398|GO:0003723|GO:0089701
Blo17g00911 318 Coils Coil 300 318 - -
Blo17g00911 318 Gene3D - 88 190 IPR012677 -
Blo17g00911 318 SUPERFAMILY RNA-binding domain, RBD 122 194 IPR035979 GO:0003676
Blo17g00911 318 ProSiteProfiles Zinc finger C3H1-type profile. 57 85 IPR000571 GO:0046872
Blo17g00911 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 191 IPR000504 GO:0003723
Blo17g00911 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 218 IPR000571 GO:0046872
Blo17g00911 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 83 IPR000571 GO:0046872
Blo17g00911 318 SMART rrm2_1 118 187 IPR003954 GO:0003676
Blo17g00911 318 MobiDBLite consensus disorder prediction 251 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00911 K12836 U2AF1; splicing factor U2AF 35 kDa subunit - rcu:8269954 406.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01207 Blo-Chr1:45289503 Blo17g00911 Blo-Chr17:29959235 8.93E-119 dispersed
Blo11g00854 Blo-Chr11:15573080 Blo17g00911 Blo-Chr17:29959235 4.75E-37 dispersed
Blo17g00911 Blo-Chr17:29959235 Blo02g00402 Blo-Chr2:4973127 1.26E-06 dispersed
Blo17g00911 Blo-Chr17:29959235 Blo12g00501 Blo-Chr12:22862319 6.45E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g31 . . . Bda03g00337 . Bpe04g00296 Bma04g00306 . . . Cma01g02046 Cma09g00013 Car01g01612 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02431 Csa04g02745 . . Blo17g00911 . . . . . . . . Cmo01g02103 . . . . Car09g00013 . Cpe02g00010 . . . . . . . Cla11g01859 Cam11g1926 Cec11g1953 Cco11g1965 Clacu11g2091 Cmu11g1894 Cre11g2302 . . Chy07g00433 Cme07g00017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000890 2 7 1 3 3 1 5 1 1 2 3 2 5 3 3 2 1 3 4 1 3 1 2 3 4 3 2 6 5 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00911 Blo_Chr17 FPKM 2.65788 3.547037 2.161324 1.772476 22.702644 14.811197 23.675955 0.0 0.0 0.0