Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00912 ATGGAAGAGGGCGGTGCGCAGATGGAAATGGCTGCCCCGAGCTTCATGCTTGAAACGCGTTCATCTCCATATTGCGATTCTTATTCTTTGCCTAAGAAGCGCGCCATCCCTTTTGCGTCCACTATTTTCCATCCCCACAACCAGCATCATCACCAGCGTTTTCAAAATCATACGGACAACTGGAATCCTTTGTTTTGGGATTGGGATACTGTCAATTTCATCTCTAAGCAATTAGACTCAAAGCCGAGTGATGAGCACCAACACAAATCTCCTCCTACTGTTATCCGTTCTTCCTTAAAATTAAACGCCAATGAGGAGATGTTAGACGAAGCAGAGGAAAGTATCCAGCTAAATTTAGGTGGCCGCTTTAATTTGAACTCTGTGGAGGAGGCCGCTTCCAAGCCCAACAAAAGGGGTCGTTCTGGGTCTCCAGGAGGTGCCACATATCCGATTTGTCAAGTTGATAACTGTGTGGAGAATCTTTCATCTGCTAAGGACTACCACCGCCGCCATAAAGTGTGTGAGCTTCATAGTAAATCCATCAAGGCTCTAGTTGCTAAGCAGATGCAGAGGTTTTGCCAGCAGTGCAGCAGATTTCATCTTCTATCTGAGTTTGACGAGGGAAAGAGAAGTTGTCGGAGACGGCTAGCTGGGCACAACAGGAGAAGGAGGAAAACGCTACCAGATGATACTGCCTCACACATAGTACTTCCCGGAAATCAGAAAAACTCAAGTGGTGGAAATATTGATATTGTCAACTTCTTGGCTGCAGTTTCTCGTGCACAAGGGAAAGTTGGAGATAAGAATGTTGATGACACATCATCACAGGACTGTGACCAACTAGTTCAAATTCTTAGTAAGATAAATTCACTTCCTATGCCAGTAGAGCTCACGGGAAAGTTTCCTGATTTAGGAAGTTCTAGTAGAACATCTCCAGAGAAAACTTCTCTACATCAAATCAACTTAAATGGGAATACTTCTCCATCAACCATGGATTTTCTTACAGTTCTCTCAGCTACTTTAGCAGCATCTAGTCCGGATGCTCTTTCTATACTTTCTCAAAAGGGCACTCAGAGCTGTGGCAGTGCAGAAACAAGGTCAACGAGCCCCAAACTTCGTACTGTTCCTGACCTGCAGAAGAAACCTGTAGCGTTTGCTACTGTCAGCGGGGAGAGAAGCAGTACCAGTTACCAGTCTTCCAAGGAAGATTCAGATAGCCATGTTCAAGAAATTCGAGCTAAATTGCCATTGCAGCTTTTTAGCTCTTCACCTGAAGTTGATGATTCACCGAAATCAACACCATTCAGTAAGTACTGCTCTTCTGACGGCAGTAATCCCATCGAGGTGGGGTCTCCATCTTCTTCTCCACCTTTTGTTCAAAAGCTCTTTCCAATGCACAACGTCAAAGGAGCTGTTCAGTCTAGTAAAATGGAAAACATGAAATTGATCAAGGGCGATGTGGAAGCTGGTAGAACTTTTGTTTCCCATATGCCATTTGATCTATTAGGAGGTTCAAATAGTGGTGCTGAGCTTGGCTCGTTTCAAAGCGTTCCACATCAAGTTGGCTACACTTCTTCTGTGTCTGATAATTCACCTTCTACTTTAATTTCTGATATCCAGGATCGGACTGGACAGATTATTTTCAAACTATTTGACAAAGATCCCAGTCATTTCCCAGTCACACTTCGGGCTCAGATATACAATTGGCTTTCAAAAAGTCCATCTGAAATGGAAAGTTTCATAAGGCCTGGATGTGTGGTGTTATCAATATATGTATCAATGCCACCTCATGCATGGGACCAACTGGAAGATAACTTAATGTTACGTCTCAAGTATCTGCTTCAAAGTTCAGACTCTGATTTTTGGAGAAGTGGAAGGTTTTTAGTAAATGCTGGGCGGCAATTAGCATCACATAACGATGGTAAAATTTATCGACGCAGAAACTGGAGAACATGTAAGTCTCCAGAGTTGATCTTAGTGTCCCCTCTAGCTGTGGTAGGTGGACAACAAACTTCCATTCTTTTAAGGGGCAAAAATCTGACTATACCTGGCACCAGGCACGTACGATTTTCTTTCTCTGTGATCCACTGCACGCAAATGGGTGGTTTCATTTCAAAGGAAGTTGTAGGATTGAACAGAAAAGGGTCAATATATGACCAAGTACACTTGGACAGGTTTCAAATAAATGATATATCTCATGGAAGTCTAGGTCGCTGTTTCATTGAGGTGGTCGAAAATGGTTTCCAATTCAGTACCTTCCCTGTTATAATTGCTGATTTTTCCATTTGTGAAGAATTAAAACTTCTTGAATCTGAGTTTGATGTGGAGACAAAAGTGTTTAGTGCGGCTTCTGAAGCCCATGAATCTACACAACCAAGGTTGAAAGATGAATTGTTTCACTTTTTGAATGAACTTGGGTGGCTATTCCAAAGAAAACGGATGTCATCCTTATTCAACTGTCTAAAGTATTCACTTAGCCGGTCCAAATTTTTGCTCACATTCTCAGTTGAGCGTGATTATTGTGCTCTAGTAAAAACTATACTGGACATTCTCGTTGATGAAGCCGTGTGTGCTATTGGTATCTCAAGAGAGTTGCTGGAAACATTGTCTGAGACTCAGCTTCTAAACCGAGCAATCAAAAGGAGATGCCGGAAAATGGTGGACTTGCTTGTCAACTATTCTGTTATTAGTCATGCATCTAGTGATGATGGCGACAGAAAGCTCATCTTTCCACCTAATCTTATTAATCCAGAGGGTGTTTCACCTCTACACTTGGCAGCTTCTATGTCAGGATCATATGATATAATTGATGCTTTGACTAATGACCCTCAGGAGATTGGTTTGAAATGCTGGAACTCTCTTCTCGATGATAGTGGGCAGTCACCATTTGCCTATGCTAAGGCCAGAAATAATCATTCGTATAACCACCTGGTGGCTCAGAAACTGGCAGACAGAAGAAATTGTCAAGTTTCTGTTACAATTAGCAATGAAATTGCCCAAGTAGATTTGTCAATGGAGCAGGAGCTTAGGATAATTGGCGAAATGACCCAAGGACGCAAATCTTGTACCAGATACTGGCTTAGGTGTCCACTTCGATTGGAAGAACTTGCCCTACGGCACGATCTAGTTGAAATGGCAAACTTGGTCGGAGAAAATATCGCAAATGTGAGCTGGTGGTGA 3180 42.58 MEEGGAQMEMAAPSFMLETRSSPYCDSYSLPKKRAIPFASTIFHPHNQHHHQRFQNHTDNWNPLFWDWDTVNFISKQLDSKPSDEHQHKSPPTVIRSSLKLNANEEMLDEAEESIQLNLGGRFNLNSVEEAASKPNKRGRSGSPGGATYPICQVDNCVENLSSAKDYHRRHKVCELHSKSIKALVAKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTLPDDTASHIVLPGNQKNSSGGNIDIVNFLAAVSRAQGKVGDKNVDDTSSQDCDQLVQILSKINSLPMPVELTGKFPDLGSSSRTSPEKTSLHQINLNGNTSPSTMDFLTVLSATLAASSPDALSILSQKGTQSCGSAETRSTSPKLRTVPDLQKKPVAFATVSGERSSTSYQSSKEDSDSHVQEIRAKLPLQLFSSSPEVDDSPKSTPFSKYCSSDGSNPIEVGSPSSSPPFVQKLFPMHNVKGAVQSSKMENMKLIKGDVEAGRTFVSHMPFDLLGGSNSGAELGSFQSVPHQVGYTSSVSDNSPSTLISDIQDRTGQIIFKLFDKDPSHFPVTLRAQIYNWLSKSPSEMESFIRPGCVVLSIYVSMPPHAWDQLEDNLMLRLKYLLQSSDSDFWRSGRFLVNAGRQLASHNDGKIYRRRNWRTCKSPELILVSPLAVVGGQQTSILLRGKNLTIPGTRHVRFSFSVIHCTQMGGFISKEVVGLNRKGSIYDQVHLDRFQINDISHGSLGRCFIEVVENGFQFSTFPVIIADFSICEELKLLESEFDVETKVFSAASEAHESTQPRLKDELFHFLNELGWLFQRKRMSSLFNCLKYSLSRSKFLLTFSVERDYCALVKTILDILVDEAVCAIGISRELLETLSETQLLNRAIKRRCRKMVDLLVNYSVISHASSDDGDRKLIFPPNLINPEGVSPLHLAASMSGSYDIIDALTNDPQEIGLKCWNSLLDDSGQSPFAYAKARNNHSYNHLVAQKLADRRNCQVSVTISNEIAQVDLSMEQELRIIGEMTQGRKSCTRYWLRCPLRLEELALRHDLVEMANLVGENIANVSWW 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 29965441 29970110 + BLOR08458 Blo17g00912 73300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00912 1059 MobiDBLite consensus disorder prediction 354 454 - -
Blo17g00912 1059 SUPERFAMILY SBT domain 150 229 IPR036893 GO:0003677|GO:0005634
Blo17g00912 1059 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 43 1024 - -
Blo17g00912 1059 Gene3D - 822 1010 IPR036770 -
Blo17g00912 1059 MobiDBLite consensus disorder prediction 354 374 - -
Blo17g00912 1059 MobiDBLite consensus disorder prediction 422 454 - -
Blo17g00912 1059 SUPERFAMILY Ankyrin repeat 874 976 IPR036770 -
Blo17g00912 1059 MobiDBLite consensus disorder prediction 219 240 - -
Blo17g00912 1059 ProSiteProfiles Zinc finger SBP-type profile. 149 226 IPR004333 GO:0003677
Blo17g00912 1059 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 1024 IPR044817 GO:0003677
Blo17g00912 1059 MobiDBLite consensus disorder prediction 388 402 - -
Blo17g00912 1059 Gene3D - 142 213 IPR036893 GO:0003677|GO:0005634
Blo17g00912 1059 Pfam SBP domain 152 225 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00912 - - - qlo:115974731 1107.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00287 Blo-Chr1:3628133 Blo17g00912 Blo-Chr17:29965441 2.89E-35 dispersed
Blo03g01558 Blo-Chr3:43319261 Blo17g00912 Blo-Chr17:29965441 9.54E-36 dispersed
Blo07g00617 Blo-Chr7:19072362 Blo17g00912 Blo-Chr17:29965441 8.12E-35 dispersed
Blo17g00912 Blo-Chr17:29965441 Blo11g00127 Blo-Chr11:962339 6.45E-29 dispersed
Blo17g00912 Blo-Chr17:29965441 Blo10g00099 Blo-Chr10:998605 1.20E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13553 PF03110 SBP 2.80E-27 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00912 Blo_Chr17 FPKM 0.0 0.0 0.0 1.129915 3.868059 2.775629 3.840946 0.270999 0.0 0.120985