Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00003 ATGAATGTGGGCCCTACTCTTCAACCTCCCAGTCCGGACGCTACGTGGCAGATTCTTCTCCTGCCTATTTCTAACTGTCGCCCTCCCTCTGTGTCACACCCAAATTTTTCGACCCGCGGAATTGGTACGAAACGTGTGATGGCGCCGAAGTCCCACTCCGACCAGCCTTCCCAAGCTCTTGCTCGTTGTGAATACAAGAACTTCACCCACAATTGTCGCCTTTTTGTAATGATCCGATCGCTTTACGGGAGTCCCACTCCCAACCCGTTCTTTCTATTCTCAATAAAAGAACCAAGGAATACACTTTCTCCAAGGAACACCACACAATGCACAAGGATAGATCCACCTTTTTATTATGGATCGAACTCCCTTTGCTTGGTGCCTCAAGCATCATGCCATGACAGTTGGAAATGCATGTCATTGAAATGTCTCAGAGATTTTGGTGCAGTTGGAAGCCAAGATAAATGGTTTCTTTCACACTTGTTTCACATAAAAGCATTTTGTTCTGGCTTTTCTAGTGTACATGGGGACAGGCCATCTGCAGAGTATGCTAAATTGAGGAAGCAATTGCTGGAAAGGGAATTTGGACATGCTCTTGGAATGAATCGCTCCAAAAGTCGCTCTCTTGTCTTTGGTTTCAGCACTTTCTTTGCCTTCTACAGAGGAGCAATTATTTCATTCTACCTCTTGAAGCTAACCATCTCCCATGTCTTCATTCATGATTTGCAAAAACGAGCAATGAAGCTTGGGCAGGCTCTAAGCACTAGGCCAGACATATTACCGGCAGTATACTGTCAAGAGCTTGCAAAACTACAGGATCAAATACCCCCATTTCCAACCCGTATCGCAATTAAATCAGTGGAGACACAGTTGGGTGTTCCTATTTCCCAAGTCTTTGGTGATATCAGCGAAGAGCCTATTGCAGCAGCGTCCTTGGGGCAGGTGTATAAAGCTCATCTGCTTTCTGGAGAGCTTGTAGCTGTTAAAGTTCAGAGGCCTGGTATGTCACTTTCGTTGACCCTTGATGCATTGTTGTTCCAGATGATTGGAGGCCAATTGAAGCGATTTGCCAAGGCCCGGAAAGATTTGTTGGTGGCAGTAAATGAGATGGTCAGGCACATGTTTGATGAGATTGATTATATACTCGAGGCCAAGAATGCTGAGCGTTTTTCTTCTCTTTATAGTTTCCACACCCGTGACACAGAAAGGGTGTCTGTGGGCAGTACTGTTAAAAAGGACCTGGCTGTTTGCGTTAAGGTTCCTAAAATATATTGGAACCTTACTAGACCTGCAGTGCTTACCATGGAATGGGTGGATGGCATAAAGCTCACGGATGAAAATGCCTTGAAGAAGGCTTGCTTGAATAGAAGAGAACTTATTGACCAGGGATTATACTGTTCTCTGAGGCAACTGCTAGAGGTCGGTTTTTTCCATGCTGATCCACATCCTGGAAACCTCGTTGCTACTGACAAAGGCTATCTAGCATATTTTGACTTTGGAATGATGGGCGATCTACCTCGGCATTTTCGTGTTGGTCTAATAAAAATTCTTGTGCACTTTGTTAACCGTGACTCTTTCGGTTTGGCGAGTGACTTCCTTTCATTGGGATTCATTCCTGATGGTGTTGACGTCCACTCTGTTTCAGAGGCACTCAAAGCATCCTTTGGAGATGGTACGAAAGAGTCTCAGGATTTTCAGGGGATATTGAGCCAGTTATACGATGTTATGTATGATTTTGATTTTTCTCTACCTCCCGACTATGCTTTGGTAATAAGAGCTCTAGGATCATTGGAAGGCACTGCAAAAGTCCTCGATCCTGATTTCAAGGTTGTTGAGAGTGCATATCCTTTTGTTATTGGGAGGTTGTTAGCAGATCCAAATCCTGACATGAGAAGAATTTTGAGAGAACTTCTTATATACAATGATGGGTCAATTAGGTGGAATCGGCTTGAGCGTCTGGTAATTTCAGCTATATCTGAACAGGCATCGGAGCCTACACGGGTGTCCTCTAAATTAAATACAAGCTTTTCGAAACCTTTGGGATTGAAATCATTTGACATGAGAGCTGTAGTTGCTGCTACAGAGGATCTTCTTCAATTTGTTCTATCAGAAAAGGGTTTGAGGGTGCGTGTCTTCTTAGTTCGGGACATCATTGGAGCAGCTGATGTTTTTCTGCAGGATGAAGTTCTTAGTTGCATCTTGAATGAGAGGTCTCGACAAAGAGAGAGGGCGGAATATGAGGGGCAAGCTGTGGTAGCTAGGATCATTCATGGGTTTCGATGCCTTTGGGAGGCTGTAAGGTGGGAGACGAACAGGAACAATGGCGCTTCCTACCCGACTGGTAATACGTAG 2352 44.56 MNVGPTLQPPSPDATWQILLLPISNCRPPSVSHPNFSTRGIGTKRVMAPKSHSDQPSQALARCEYKNFTHNCRLFVMIRSLYGSPTPNPFFLFSIKEPRNTLSPRNTTQCTRIDPPFYYGSNSLCLVPQASCHDSWKCMSLKCLRDFGAVGSQDKWFLSHLFHIKAFCSGFSSVHGDRPSAEYAKLRKQLLEREFGHALGMNRSKSRSLVFGFSTFFAFYRGAIISFYLLKLTISHVFIHDLQKRAMKLGQALSTRPDILPAVYCQELAKLQDQIPPFPTRIAIKSVETQLGVPISQVFGDISEEPIAAASLGQVYKAHLLSGELVAVKVQRPGMSLSLTLDALLFQMIGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYILEAKNAERFSSLYSFHTRDTERVSVGSTVKKDLAVCVKVPKIYWNLTRPAVLTMEWVDGIKLTDENALKKACLNRRELIDQGLYCSLRQLLEVGFFHADPHPGNLVATDKGYLAYFDFGMMGDLPRHFRVGLIKILVHFVNRDSFGLASDFLSLGFIPDGVDVHSVSEALKASFGDGTKESQDFQGILSQLYDVMYDFDFSLPPDYALVIRALGSLEGTAKVLDPDFKVVESAYPFVIGRLLADPNPDMRRILRELLIYNDGSIRWNRLERLVISAISEQASEPTRVSSKLNTSFSKPLGLKSFDMRAVVAATEDLLQFVLSEKGLRVRVFLVRDIIGAADVFLQDEVLSCILNERSRQRERAEYEGQAVVARIIHGFRCLWEAVRWETNRNNGASYPTGNT 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 74772 81406 - BLOR08491 Blo18g00003 73307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00003 783 CDD ABC1_ADCK3-like 270 532 - -
Blo18g00003 783 ProSiteProfiles Protein kinase domain profile. 301 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00003 783 SUPERFAMILY Protein kinase-like (PK-like) 272 512 IPR011009 -
Blo18g00003 783 Pfam ABC1 atypical kinase-like domain 270 527 IPR004147 -
Blo18g00003 783 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 144 768 - -
Blo18g00003 783 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 144 768 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00003 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101207577 900.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01665 Blo-Chr1:56394273 Blo18g00003 Blo-Chr18:74772 6.20E-105 dispersed
Blo16g00035 Blo-Chr16:1741220 Blo18g00003 Blo-Chr18:74772 1.75E-38 dispersed
Blo17g00148 Blo-Chr17:1381454 Blo18g00003 Blo-Chr18:74772 5.56E-101 dispersed
Blo18g00003 Blo-Chr18:74772 Blo07g00163 Blo-Chr7:2098065 6.69E-50 dispersed
Blo19g00101 Blo-Chr19:2732106 Blo18g00003 Blo-Chr18:74772 4.87E-12 dispersed
Blo18g00003 Blo-Chr18:74772 Blo12g00833 Blo-Chr12:26635082 1.02E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012518 0 3 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00003 Blo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.272015 0.0 0.0 0.0 0.0 0.0