Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00005 ATGGAAGACGTGATGCTGATGGGGGAGATTGAAGCCACCGCCGCTCAGCTCGGAATCGATCTCTCCCAAATCGATCTTCACTCCATTCGTCTCCCTCCAGGTGAAGACTTCGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGGAGTTTGATACTGGATTTGGAAGCATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGTGAAAAATTTGATAAGCTTGAAGGTGTAATTCGCAAGATATACAGTCAAATTGGAATAATCAAGGAGGATGGTCTTTGGATGCCTGTTGATCCTGAGACACAAAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCCCAGGAAGCTGAACTTGCTAAGGAGAAAACAAATGGATACAAACTCGACAGAGCACACATATTTGCTGTTAGCATGTTTGAAGATTTCGATAAATTCATGAAGGTTCCTGATGAGTGGGTTACTCCTGAAAGCATTCCATACTCTCCGGGGGAGAATCTTCAAAGTTGGCTTACAGATGGGAAAGCTCGCGACCAGTTTGTGATTCGTGCGGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCTGACCCTGTGTACAAGCGGACATTTTGGACAGAAGGTTTTGTCCAATGGTCATCTCTTGGGACTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGCACCTTTAATCGCTTAATGCGATATGCTCATCTTCTGGTAGTTAAACTGATTGACTTTTCACCTGGTGAGAAATATTTAGTAACTTACAGTAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCCGACGAATTTGCTGTTGGAGGAACAGGGGCTGTTGCAGGAGTTTCTTGGCCAGTTTTCAGATGGGGTGGAAAGGATGATAAATATTTTGCCAGGATTGGAAAAAATTTAATCTCTGTCTATGAAACAGAAACTTTTTCACTGGTTGACAAGAGGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCAACTGATCCAATTCTTGCACTTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCCAGCAAAGAAGAAATTAGGCAGAAAATTCTTTTCAGTGTTAATGATTGCAAAATGTATTGGCAAAGCAATGGGGATTATCTTGCTGTTAAGGTTGATCGTTATACAAAGACAAAAAAGAGCACATACACTGGGTTTGAGCTTTTCCGCATCAAAGAACGCGATATTCCGAGTGAGGTTTTGGAACTTGAAAACAAGAATGATAAGATTATTGCTTTTGCTTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGGCCAGACATAAGTTTTTACTCAATGCGAACTGCTCACAATACTGGTCGAGTTTTGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCGGGACTAAAGGGTTTCAACGGACAGCTCGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCCACAGCTGAGCATTTCATGGCCACAGACATTGAATGGGATCCCACGGGAAGGTGGTATGTTGCAACTTCTGTGACATCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGCAAGCTACTGTATAGAATATTGAAGGATCATTTCTATCAGTTCTCATGGCGACCGAGGCCACCATCGTTGTTGTCACCTGAGAAGGAAGAGGAGATAGCTAAAAACTTGAAGAAGTACAGTAAGAAGTACGAAGCAGAAGATCAAGACGTGTCGATGCTATTAAGCGAGCAGGATCGGGAGAAGCGGAAGATGTTGAAGGATGAATGGGATAAATGGGTGAGCGAGTGGAAGAGGCTGCATGAAGAAGAAAAACTGTGGAGGCAGCAACTAAGGGATGGTGAAGCCAGTGATGAAGAAGAAGAAGAATACGAAGCCAAAGAGGTTGAAGTTGAGGAGATTCTTGATGTTGTGGAGGTGGTTGTTGATCTTGACGAGTAA 2157 43.12 MEDVMLMGEIEATAAQLGIDLSQIDLHSIRLPPGEDFGIISDDEDVLQEENLEFDTGFGSIIVVDNLPVVPREKFDKLEGVIRKIYSQIGIIKEDGLWMPVDPETQKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVSMFEDFDKFMKVPDEWVTPESIPYSPGENLQSWLTDGKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFVQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHLLVVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVAGVSWPVFRWGGKDDKYFARIGKNLISVYETETFSLVDKRSLKVDNVVDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEEIRQKILFSVNDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPSEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAHNTGRVLKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFSWRPRPPSLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKDEWDKWVSEWKRLHEEEKLWRQQLRDGEASDEEEEEYEAKEVEVEEILDVVEVVVDLDE 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 82977 86727 - BLOR08493 Blo18g00005 73309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00005 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 715 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00005 718 PIRSF Transl_init_eIF3b 6 715 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00005 718 Coils Coil 689 709 - -
Blo18g00005 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Blo18g00005 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 715 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Blo18g00005 718 SUPERFAMILY DPP6 N-terminal domain-like 219 600 - -
Blo18g00005 718 SUPERFAMILY RNA-binding domain, RBD 59 139 IPR035979 GO:0003676
Blo18g00005 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Blo18g00005 718 CDD RRM_eIF3B 59 142 IPR034363 -
Blo18g00005 718 Gene3D - 59 143 IPR012677 -
Blo18g00005 718 PANTHER BNACNNG51870D PROTEIN 6 715 - -
Blo18g00005 718 Pfam Eukaryotic translation initiation factor eIF2A 406 607 IPR013979 -
Blo18g00005 718 Gene3D - 181 381 IPR015943 GO:0005515
Blo18g00005 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Blo18g00005 718 Gene3D - 382 610 IPR015943 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00005 Blo-Chr18:82977 Blo18g00835 Blo-Chr18:24633941 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00005 K03253 - csv:101213144 1248.42