Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00009 ATGTCTGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGTGCCTCCAAGACTTACCCTCAGCAAGCCGGTACCATTCGCAAGAACGGTTACATCGTCATCAAGAACCGCCCCTGCAAGGTTGTCGAGGTTTCTACTTCAAAGACGGGGAAGCATGGCCATGCCAAGTGTCACTTTGTAGGGATTGATATTTTCACTGCAAAGAAACTTGAGGATATTGTTCCATCTTCCCACAATTGTGATGTCCCCCATGTTAATCGCACGGATTATCAACTGATTGACATATCTGAAGATGGATTTGTAAGTCTCTTAACTGACAATGGCAACACCAAGGATGACTTGAAGCTTCCTACGGATGACAGTTTACTCAGTCAGATCAAAGAAGGATTTGCTGAAGGAAAGGACCTTGTAGTGTCGGTGATATCTGCTTTCTCCTCCCTCTCTGCCTATGGCATCATCATGGAGCATGAGATCTGTATTCCCGCGTCCACTGACGACCTTTGTGGTTCTACTGCTTATGGTTCATGCCGTCTGTTGCTTTTATCTCCCTGGTGTCGCTCCCGAAGATTTTCGGAAGGTGAGCTCTTCCTTGCTCATCATATCTTGCTTCGCACTTTGTTTGCCATGTGTTGCTTTTCTCAATCCGGGATTGTTTCTGGATCTGTGCTGGAAGTGACCTTACCTAGGAAAATTGGTGATTCTAAGTCTAGTATCGTACTGAAATTGATGCTCTATTCTGTTTACACCTTTAAACGTTCGTTGATCATCGTATCAATTTTTAGAGAGATGGCTGTTTTTCATTTGCAGTCTTTTGCATCATCTAATCTGAAAAGCAATTTAACATGCGAATTCGCCGAGGCCTTGCTGTCCTTGGTTATCATGATATCGGTCATATTGAGTCTGGGAGAGGAACTACGAGTCAAAGTCAACAAACTCACTTCTATAAAGACTCAGCTTCCTTTCTCATACTACTCACTTCCTTTCTGTGTTCCAGAGAAGATAGTAGACAGCGCTGAAAATCTTGGAGAGGTTCTTCGCGGTGATCGAATTGAGAACTCGCCATATGTGTTCAAAATGCAAGAACCTCAGATGTGCAATATTCTCTGCCGCATAGAACTTGACGCCAAAACTACAAAGGAGTTCGGAGAGAAAATTGATGATGAATATCGGGTCAACATGATTCTCGATAACCTTCCTTTGGTTGTTCCTCTTAGAAGGATAGATTCAGAATCTGCCACTGTTTATCAGCTTGGCTATCATATTGGGTTTAAAGGCCAATATAGTGGTGTATGTTCATGCTTTGCTACTACTAAAGTTTTCTGCTTTTCCAACAAGGAGGAAAAGCATTTAATCCACAATCATCTGGCATTTACCGTAAAATACCATAAAGATGTGCAAACTGATTCGACGAGGATTGTAGGGTTTGAAGTAAAGCCATTCAGTGTTAAGCATAAATATGATGGGAAATGGAACGACAAGCAGACTCGTCTAACAACATGTGACCCTCATGCACAGCACACGGTCGATAACTCCAATATACCTCTTGAAGTAGAAGAAAAAAATGAAGTCATATTTACATACGATGTTGAATTTCAGGTGTGTTTCAGTCTCCATAATTATTTATCAACTTATTTAAGCACAGCTTCCAATTTGAGGTATTCTCCAACTTGGCTGCAAGATTTTAGTAATTTCTCTGCTGTTAAGTGGGCTTCCAGATGGGATGCCTATCTGTTGATGAGCGATGATCAGATTCACTGGTTTTCTATTGTGAATTCTTTGATGATTGTTCTCTTCCTCTCTGGCATGGTTGCAATGATAATGCTTCGAACATTATATCGCGATATTTCGAAGTACAATGAACTCGAGACACAAGAAGAAGCCCAAGAAGAGACTGGATGGAAGCTTGTTCATGGTGATGTTTTCAGACCTCCAAGTCACTCAAATCTACTCTGCATCTATGTCGGAACAGGAGTTCAGTTTCTTGGTATGGTACTTGTAACAATGCTTTTTGCGGTGCTCGGATTTCTCTCCCCTTCAAACAGGGGTGGTCTCATGACAGCAATGCTCTTGCTGTGGGTATTCATGGGCCTTTTTGCTGGCTATGCTTCTGCTCGTTTGTACAAGATGTTTAAAGGTGCAGAGTGGAAGAAAATTGCCCTGAGGACTGCAATTTTGTTTCCAGCCACGGTCTTCGCAATTTTCTTTGTTTTAAACACTCTCATATGGGGACAGAAGTCCTCTGGAGCTGTTCCATTTGGGACGATGTTTGCTCTGGTTTTCCTGTGGTTTGGAATTTCAGTCCCACTTGTCTTTGTGGGTGGCTATGTTGGCTTCAAGAAGCCAGCCATTGAAGACCCTGTGAAGACGAACAAAATTCCTAGACAGATTCCAGAGCAGGCGTGGTACATGAAACCAGCATTTTCCATTCTAATTGGAGGCATTCTCCCATTTGGAGCCGTTTTCATTGAGCTCTTTTTCATCCTGACCTCCATTTGGCTGAACCAGTTCTACTACATCTTCGGGTTTCTCTTCTTGGTTTTTATCATCCTCATCGTCACCTGCGCTGAAATAACAATCGTGCTATGCTACTTCCAACTGTGCAGTGAAGACTATCTGTGGTGGTGGAGGTCCTACCTGACGTCAGGCTCATCCGCTCTGTATCTCTTCCTCTATGCTACGTTCTACTTCTTCACCAAGCTTGAAATTACAAAGCTCGTATCAGGCCTGTTGTATTTCGGGTACATGCTCATCGTTTCTTACGCTTTCTTTGTGTTGACGGGTACCATTGGCTTTTACGCTTGCTTCTGGTTCACGAGGCTCATCTACTCTTCAGTGAAAATTGATTGA 2850 43.09 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLSQIKEGFAEGKDLVVSVISAFSSLSAYGIIMEHEICIPASTDDLCGSTAYGSCRLLLLSPWCRSRRFSEGELFLAHHILLRTLFAMCCFSQSGIVSGSVLEVTLPRKIGDSKSSIVLKLMLYSVYTFKRSLIIVSIFREMAVFHLQSFASSNLKSNLTCEFAEALLSLVIMISVILSLGEELRVKVNKLTSIKTQLPFSYYSLPFCVPEKIVDSAENLGEVLRGDRIENSPYVFKMQEPQMCNILCRIELDAKTTKEFGEKIDDEYRVNMILDNLPLVVPLRRIDSESATVYQLGYHIGFKGQYSGVCSCFATTKVFCFSNKEEKHLIHNHLAFTVKYHKDVQTDSTRIVGFEVKPFSVKHKYDGKWNDKQTRLTTCDPHAQHTVDNSNIPLEVEEKNEVIFTYDVEFQVCFSLHNYLSTYLSTASNLRYSPTWLQDFSNFSAVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPSHSNLLCIYVGTGVQFLGMVLVTMLFAVLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKMFKGAEWKKIALRTAILFPATVFAIFFVLNTLIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMKPAFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGLLYFGYMLIVSYAFFVLTGTIGFYACFWFTRLIYSSVKID 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 103981 109442 - BLOR08497 Blo18g00009 73313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00009 949 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 302 534 IPR004240 GO:0016021
Blo18g00009 949 CDD S1_eIF5A 86 144 - -
Blo18g00009 949 SUPERFAMILY MFS general substrate transporter 586 770 IPR036259 -
Blo18g00009 949 TIGRFAM eIF_5A: translation elongation factor IF5A 17 145 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo18g00009 949 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 566 949 IPR004240 GO:0016021
Blo18g00009 949 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 302 534 - -
Blo18g00009 949 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 566 949 - -
Blo18g00009 949 Gene3D - 1 85 IPR014722 -
Blo18g00009 949 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo18g00009 949 MobiDBLite consensus disorder prediction 1 21 - -
Blo18g00009 949 Gene3D - 86 155 IPR012340 -
Blo18g00009 949 Pfam Endomembrane protein 70 321 905 IPR004240 GO:0016021
Blo18g00009 949 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Blo18g00009 949 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo18g00009 949 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 145 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo18g00009 949 SUPERFAMILY Nucleic acid-binding proteins 86 146 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00782 Blo-Chr4:7763372 Blo18g00009 Blo-Chr18:103981 2.10E-91 dispersed
Blo15g00405 Blo-Chr15:5772743 Blo18g00009 Blo-Chr18:103981 7.51E-154 dispersed
Blo16g00178 Blo-Chr16:3985046 Blo18g00009 Blo-Chr18:103981 9.80E-91 dispersed
Blo12g01049 Blo-Chr12:28308037 Blo18g00009 Blo-Chr18:103981 0 transposed
Blo01g01418 Blo-Chr1:52859890 Blo18g00009 Blo-Chr18:103981 1.01E-76 wgd
Blo17g00003 Blo-Chr17:16087 Blo18g00009 Blo-Chr18:103981 2.43E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00009 K17086 - tcc:18587702 1051.2