Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00010 ATGCAGCAAGTTGATAATTGTTTGTCAAAGGTGGAACAATCCCCTTCCGAGTCAATGCAGAAAGCACTTTCTGCTTCCCAGAAGGCATTGATATCTGAACCACTTCTAACACACTCAGATATTGACGTTAAAGTTGCTGTTGCCTCTTGCATAAGTGAGATAACTAGGATCACTGCTCCTGATGCTCCCTATGATGATGAGAAAATGAAGGCAGTATTTCACCTTATTGTATCCTCATTTGAAAATATATCTGATAATTCAAGCCGATCTTTTATGAAGAGGGTGACAATTCTCGAAACCGTTGCTAAGGTCAGGTCGTGTGTGGTTATGTTGGACCTTGAATGTGATGATTTGATTCTTGAGATGTTCCATTGCTTCCTCAAGAATATAAGGGATTCTCATCCAGAAAATGTGTTCTCATCAATGGAGAGAATCATGACCCTCGTTTTAGAAGAAAGTGAAGATATATCTGTGGAATTACTCAAACCCATATTAGCTTTTGCAAAGAAGAACAATGAGGAAGTATTGCCCATTGCTCGGAAGTTAGGAGAGAAGGTACTTGAAAACTGTTCCACTAAGTTGAGACCCTACAAATTTCTGATAAGTCAAGCTGTAAAAAAATTGGGCATCTCTCCAGAAGATTACAGCGACATAGTTTCCTCTTTATGCCAAGAGGCCTCCAGCTCTGTTGAACAAGATGATTTTCTTGCTGCTAGCAAAAAAGTGGTAAGCTTCTTTATGGTTGTGGAGAAATTAATAAAATTTAATATGATGTTACAGAATGAAACTATGTGTTTAAATACTTATCTCGTCAAGTTAATCCCATTTCAATTACAAATCAATATTTTAAGTTTATGGGTTAGTAATTATTTTACATTTAGTTGTATGTGTATAAGTGTAATTACTTTGTGCAGGCTGACAAGTGCAAGTCAGTTAGGATACCTGCTGAGTGGGCATCTTAGATTCACTTTGATGTTTTTTTTCCTTTGTTTAATTTTTGAAACTGCAGTTGGCAAACTTTCAGAGTCAGTTATGGGAAATGGCAGCGCCACTAATGCAGAGAATGTTCTGGGAGAGTTGGAAGCTAAAAAGGAGGATGGGAAGCACACTGATCAGTCAGGGAATTCTGAACGTGATAATTTAAATTTAGAAAAAGAAATTAAAGCCGATGAAAAACAAGAGAGGCATGTCAAGAGAAGAGGAAGGAAGCCTAAAGTTACGCAAAAATCAAAAGAACCTTCTGAAAGTTCTCTTGTCAATACCAAGAAGACATCTGAGAATCTTTCGGCTCGCAAAGGTGATGGCAAGAAGTTTGCTTCTAATTCTCCTTGTGAGAATCCACTTGTTGAACATGTGCCTTCTGAAAATAAAAAAGGGGCTGCTGTTATGTCTTCATCACCCATGGTATTGGAGAATGAATCTCCTTCCCCAAGTGGGTGCCGTCCCGAAGAACTGCGTACCAAAAGAATTGGGCGTAAAAAAAAGAGAGAAAATTTGGATAAAGTGGCTATACAGTCTGCAGATGATACTTCTAAAAAGCTTTCAGAAGCAACAAGTGATTCCGAAGTTAAACTCAACAGACGAGCTGGAAAGAAAGCTACTGCTGAGGTTTCTGATGAGAATACAACTAATGCAGCAGAAAATGTATTGGAAAAGGAGACCGATTCAAGCGATGAAAAACAGAAAGCATTGAAAAAATTATCTGTAAAGTTAGATGGAAGGGGTAAGGATGATGGTGGATCCTCTTTAAAGCAGTCTGAAGAGAAAAAAAGGCGTGGTCAGGGAAAAGGTTCTTCTGTGAAGAATGTGACAGCACCAATGAGTCAAGAGGAAAGAACGAAGTCAGCTTCGAAATTGGTAAAAGAGAAACATGACACGGAGGGGACTTCAAGGACAAGCTCAAAGAGGAAGCGGACACCAGGGAAAGAAAAAGAATCAAATAGCAAAGAATTTGGAGAGGATTTCGTTACCAAAAAGGTAAAAGTTTGGTGGCCAAAAGATCAAATGTTTTATGAAGGTATTATTGATTCCTTTGATCCATACACCAAGAAGCATAAGGTTGTATATACGGATGGAGATGAAGAAATACTGAATCTTTCAAGGGAGAAGTGGCAGTTCATTGATGACTACTCTAAACCTGAACTGGTAAGAAACCTCAAGACACAATTTTATTTGGTCAAAGCACTAGAATTTCCCCCGGCGAGTCCCGATACTTCCCTTGATATGCCATTAATAAAGAAAGTAAGGCTGAATACAGACAGGCCAGCTAAGCAGGGAAAGATGGATTCTTTGGGCAAAAAGAGTGGTGGAACTTCATCTGGCAAACTGCAAGGTTCCACTGGTCGTATTTCTAAAGATGGCAGTAAAGTTGAAGGCATATCCAAAGATTCGGCATCCAAGACAGCTGGAAAAGCTTTGGATAGTAGTCAGGGGAAAACAAAGGATCATACTTCTGGAGATGGTAGTGGTAAGATTTCTGATGCAGTTAGAAAAAGTTCAAGTAAATTAAATAAAGATGATGAGACACCCAAGGGCAGCAAATCCAAGGATGAGGAAACTATAACCCCCAGAATTTCAACAAAGCCCAAGCAAGATGCTCCAAAATCAGGGAAGTCCAAACAAGAGACCCCAATGACTCCTTTGTCCAAAGGCAAGACCCCTAAAAGTGGAGGAAAATCAAATATTAACGGTAGAAGCAAGGTGAAATCTTCTTCAAGAACAAAAGAAAGTGTAGATTTGAAGGAGTATTCAAGGGATTCGGTGAAAGTGAGTGATTCAGAAAAAGCATCAGATGAGATAAAAGGGAAATCTATAAATTCATCTCAAGCTGAGGAGGGAGGAGGAGTCAAGAGTGGAGAAAAGAGAAAAAGAGGGCCCAAAAGCTCGGACGATTTCGGCGAGTGTGATACAATTCTCGAGGAGATGATTGCTCTGGTCAACAAGAGGGAATGCCGAAAAGATCCAAAGGATCCCACTAGGGTTCTTGCCGAAATAGTTCCATTGGAGTACAAGGTTTACGATTATCTAATTCAAACTCCTGCTTGTTACCAAACCAGAGCAGATATCGACGACTTCTTAGTAAAATCTAAAAAGTTTGATCTTGCTAAAGCTGAAATTTTCAACATCCTCAACTTAAGGCCCACGCAACCTGTTGAAATATTCCCGATAATAGAGGATTGCACGGCTCGAATGGGAGACGAGGAGATTCAAGAGTTAGTAGAAATGGTGGGAGACGTGTTTCCTCCTGCAAATCTAGGGACTAACAAGGATAAGGAAAGCGATATAGCCATGGGTTGTATTGAAGAAGAGATCAAGAAAGATGAAGATATTGCGAAAGAAAGACAAAATATGAATGGTGCCTGTGCCGATCCCGATCCTGATCCTTCTCCCGTGATGATGATGATGATGATGAATAAGAGGACCGACCCGTGA 3432 39.8 MQQVDNCLSKVEQSPSESMQKALSASQKALISEPLLTHSDIDVKVAVASCISEITRITAPDAPYDDEKMKAVFHLIVSSFENISDNSSRSFMKRVTILETVAKVRSCVVMLDLECDDLILEMFHCFLKNIRDSHPENVFSSMERIMTLVLEESEDISVELLKPILAFAKKNNEEVLPIARKLGEKVLENCSTKLRPYKFLISQAVKKLGISPEDYSDIVSSLCQEASSSVEQDDFLAASKKVVSFFMVVEKLIKFNMMLQNETMCLNTYLVKLIPFQLQINILSLWVSNYFTFSCMCISVITLCRLTSASQLGYLLSGHLRFTLMFFFLCLIFETAVGKLSESVMGNGSATNAENVLGELEAKKEDGKHTDQSGNSERDNLNLEKEIKADEKQERHVKRRGRKPKVTQKSKEPSESSLVNTKKTSENLSARKGDGKKFASNSPCENPLVEHVPSENKKGAAVMSSSPMVLENESPSPSGCRPEELRTKRIGRKKKRENLDKVAIQSADDTSKKLSEATSDSEVKLNRRAGKKATAEVSDENTTNAAENVLEKETDSSDEKQKALKKLSVKLDGRGKDDGGSSLKQSEEKKRRGQGKGSSVKNVTAPMSQEERTKSASKLVKEKHDTEGTSRTSSKRKRTPGKEKESNSKEFGEDFVTKKVKVWWPKDQMFYEGIIDSFDPYTKKHKVVYTDGDEEILNLSREKWQFIDDYSKPELVRNLKTQFYLVKALEFPPASPDTSLDMPLIKKVRLNTDRPAKQGKMDSLGKKSGGTSSGKLQGSTGRISKDGSKVEGISKDSASKTAGKALDSSQGKTKDHTSGDGSGKISDAVRKSSSKLNKDDETPKGSKSKDEETITPRISTKPKQDAPKSGKSKQETPMTPLSKGKTPKSGGKSNINGRSKVKSSSRTKESVDLKEYSRDSVKVSDSEKASDEIKGKSINSSQAEEGGGVKSGEKRKRGPKSSDDFGECDTILEEMIALVNKRECRKDPKDPTRVLAEIVPLEYKVYDYLIQTPACYQTRADIDDFLVKSKKFDLAKAEIFNILNLRPTQPVEIFPIIEDCTARMGDEEIQELVEMVGDVFPPANLGTNKDKESDIAMGCIEEEIKKDEDIAKERQNMNGACADPDPDPSPVMMMMMMNKRTDP 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 120714 131584 + BLOR08498 Blo18g00010 73314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00010 1143 MobiDBLite consensus disorder prediction 948 966 - -
Blo18g00010 1143 Pfam RNA polymerase Rpb4 1003 1079 IPR005574 GO:0006352|GO:0030880
Blo18g00010 1143 Pfam Sister chromatid cohesion protein PDS5 protein 2 197 - -
Blo18g00010 1143 SMART rpol4neu2 959 1083 IPR006590 -
Blo18g00010 1143 Gene3D - 656 703 - -
Blo18g00010 1143 PANTHER TRANSCRIPTIONAL REGULATOR 2 909 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 597 613 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 749 966 - -
Blo18g00010 1143 Coils Coil 380 400 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 536 550 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 496 535 - -
Blo18g00010 1143 SUPERFAMILY HRDC-like 991 1081 IPR010997 GO:0000166|GO:0044237
Blo18g00010 1143 MobiDBLite consensus disorder prediction 871 901 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 902 934 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 765 784 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 411 426 - -
Blo18g00010 1143 CDD TUDOR 658 701 IPR002999 -
Blo18g00010 1143 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 909 IPR039776 GO:0007064
Blo18g00010 1143 MobiDBLite consensus disorder prediction 363 397 - -
Blo18g00010 1143 SUPERFAMILY ARM repeat 34 227 IPR016024 -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 831 870 - -
Blo18g00010 1143 Gene3D - 913 1078 IPR038324 -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 614 650 - -
Blo18g00010 1143 SUPERFAMILY Tudor/PWWP/MBT 655 695 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 551 595 - -
Blo18g00010 1143 MobiDBLite consensus disorder prediction 363 650 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00010 - - - gmx:106794129 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00154 Blo-Chr11:1209126 Blo18g00010 Blo-Chr18:120714 2.80E-13 dispersed
Blo17g00004 Blo-Chr17:33841 Blo18g00010 Blo-Chr18:120714 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00010 Blo_Chr18 FPKM 45.228348 43.117062 39.742229 37.049007 42.539379 44.596821 41.450523 38.352009 35.680817 37.48753