Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00012 ATGTCGAATTTACTCAAAGGAGATTCATTTCTGATACGCGAGGTATGGAATGATAACCTCGAGGAGGAGTTTGCTCTTATTCGCGAAATTGTTGACGATTTTAAGTACATAGCAATGGATACCGAGTTTCCTGGAGTAGTGCTACGTCCTTTGGGAAACTTTAAGAATATTAATGACTATAACTACCAAACACTGAAGGGCAATGTTGATATGTTGAAGTTGATTCAATTGGGTCTCACATTCTCTGATGAGAAAGGTAATCTGCCTACTTGTGGGACTGATAAGTATTGCATCTGGCAATTCAATTTCCGAGAGTTCAACATAAGCGAAGATATCTTTGCAAACGAATCCATTGAGCTTTTGCGGGAGTGTGGGATGGATTTTTCCAAGAACAATGAGAAGGGTATTGATCTGAATCAGTTCGGTGAGCTGCTGATGTCGTCTGGCATAGTACTAAATGATGATGTTTCTTGGGTCACATTTCACAGTGGCTATGATTTTGGGTACTTGCTTAAGCTCCTGACTTGTCGAAGTTTACCAGACTCCCAGGCAGGTTTCTTCGAGTTGATTAATGTGTACTTTCCAGTGCTTTATGATATCAAGCACTTGATGAAGTTCTGCAATAGTCTTCATGGTGGGTTGAACAAGCTTGCAGAGCTGCTGGAAGTCGAGAGGGTTGGTGTGTGTCATCAAGCTGGGTCTGATAGCTTGCTCACGTCCTCCACATTTAGGAAGTTGAGAGATACCTTTTTCAATGGATCGACAGAGAAGTATGCAGGTGTTTTATATGGCCTTGGTGTAGAAAATGGACTGACTACTAATTAA 825 41.33 MSNLLKGDSFLIREVWNDNLEEEFALIREIVDDFKYIAMDTEFPGVVLRPLGNFKNINDYNYQTLKGNVDMLKLIQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNISEDIFANESIELLRECGMDFSKNNEKGIDLNQFGELLMSSGIVLNDDVSWVTFHSGYDFGYLLKLLTCRSLPDSQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSSTFRKLRDTFFNGSTEKYAGVLYGLGVENGLTTN 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 139181 140005 + BLOR08500 Blo18g00012 73316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00012 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 273 IPR039637 GO:0004535|GO:0030014
Blo18g00012 274 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
Blo18g00012 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 1 273 - -
Blo18g00012 274 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Blo18g00012 274 Gene3D - 3 268 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00012 K12581 CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8 - mnt:21397606 508.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00156 Blo-Chr5:1419277 Blo18g00012 Blo-Chr18:139181 1.92E-165 dispersed
Blo07g00668 Blo-Chr7:21857286 Blo18g00012 Blo-Chr18:139181 5.89E-160 dispersed
Blo08g00057 Blo-Chr8:470481 Blo18g00012 Blo-Chr18:139181 1.83E-97 dispersed
Blo10g00512 Blo-Chr10:11840890 Blo18g00012 Blo-Chr18:139181 3.49E-139 dispersed
Blo14g00241 Blo-Chr14:2146145 Blo18g00012 Blo-Chr18:139181 2.04E-98 dispersed
Blo16g00463 Blo-Chr16:18491056 Blo18g00012 Blo-Chr18:139181 4.42E-78 dispersed
Blo17g00006 Blo-Chr17:47518 Blo18g00012 Blo-Chr18:139181 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g517 . . . . . . . . . . . . . . . . . Bhi04g00042 Tan02g2757 . . . . Lcy13g1825 . . . . . . . . . . . . . . . . Blo18g00012 . Bda13g01246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000920 6 2 6 7 5 2 2 2 1 1 2 2 3 2 2 4 2 5 4 2 2 3 1 2 1 2 2 5 2 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00012 Blo_Chr18 FPKM 5.660272 5.215617 6.178946 5.756339 9.61545 8.115608 7.427613 3.645532 5.356415 4.464815