Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00013 ATGATTTACGGTAAGGTATGTGTTGCTGCACTTTACTTCCCTCCAGTAACCAGAGGTATGGAGTCACCCAAGTCTCTTGCTCTGATCAACGTGGGTAGATCTTTTCGTTCTCTCTTTGATGCTGACAAAGCCTATTTAGCTCCTTTGGACCAAACTGGGAACGCACCAGCAGTGGAAAAGCTGCTTTCGGCTGCCTTCTTTTCCGTTCTATCTACTCCATTTTCCTGCTCTTCTTCCTCCCAACTCCCACCCCTTCAACTTCATCCTCCGGTCAGCATGCTGTGGAAGATGCAGCTCCTCTCCAAGCAAAGCAAGTCCGGTGCGGTCCCTGTTTACCTTAACGTCTATGATTTAACCCCCATCAATGGCTACGCCTACTGGCTCGGCCTCGGTGTCTACCATTCTGGCGTTCAAGTACACGGAGTTGAATACGCATTTGGAGCGCACGAACAGTCCACCACTGGAATCTTTGAGGTGGAACCAAAGCACTGCCCTGGGTTCACATTCAGAAAATCTATTTTGATCGGAAGAACCAATCTCGGGTCCAAAGACGTTCGATCATTCATGGAAAAGCTTGCGGAAGATTATTCTGGAAACACATACCGTCTCATAACAAAGAACTGCAACCATTTCTGCAGCGACGTTTGCGTTCGATTGACAGGGAAACCCATCCCCAGCTGGGTCAATCGTCTTGCTCGCCTTGGTTTTCTATGCAACTGTGTTCTTCCTGCTGATTTGAACGAAACCAAAGTCCGACACGCTAGATTGGAAGATAAAGGATGCCAAAGAGATAAGAAGAAATTAAGAAGCCATTCAAGTAGGTATACATCTTCCTCTGATATCACATCTTCTCCATTGTCATTATCACCATCGCCTTGTCCTCCTCCTTCTTCCTCGGTCCAAACTAGTAGACAGAGACAATGTCTTCCTCGGTCTTCATCCCTGATTCATTCTGCTTCCACATCAAGCTTAGCTTTAAAGCTGTAA 987 46.81 MIYGKVCVAALYFPPVTRGMESPKSLALINVGRSFRSLFDADKAYLAPLDQTGNAPAVEKLLSAAFFSVLSTPFSCSSSSQLPPLQLHPPVSMLWKMQLLSKQSKSGAVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAFGAHEQSTTGIFEVEPKHCPGFTFRKSILIGRTNLGSKDVRSFMEKLAEDYSGNTYRLITKNCNHFCSDVCVRLTGKPIPSWVNRLARLGFLCNCVLPADLNETKVRHARLEDKGCQRDKKKLRSHSSRYTSSSDITSSPLSLSPSPCPPPSSSVQTSRQRQCLPRSSSLIHSASTSSLALKL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 140448 143627 + BLOR08501 Blo18g00013 73317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00013 328 ProSiteProfiles PPPDE domain profile. 109 246 IPR008580 GO:0008233
Blo18g00013 328 Gene3D PPPDE domains 105 255 IPR042266 -
Blo18g00013 328 PANTHER DESUMOYLATING ISOPEPTIDASE 99 320 IPR008580 GO:0008233
Blo18g00013 328 PANTHER OS02G0788133 PROTEIN 99 320 - -
Blo18g00013 328 Pfam PPPDE putative peptidase domain 110 243 IPR008580 GO:0008233
Blo18g00013 328 MobiDBLite consensus disorder prediction 262 305 - -
Blo18g00013 328 SMART DUF862_2a 109 247 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00013 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - pvy:116138045 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00378 Blo-Chr7:6343311 Blo18g00013 Blo-Chr18:140448 4.56E-22 dispersed
Blo07g00662 Blo-Chr7:21672806 Blo18g00013 Blo-Chr18:140448 3.25E-79 dispersed
Blo09g00067 Blo-Chr9:1146355 Blo18g00013 Blo-Chr18:140448 5.92E-24 dispersed
Blo10g00515 Blo-Chr10:11941260 Blo18g00013 Blo-Chr18:140448 5.48E-81 dispersed
Blo12g01060 Blo-Chr12:28392880 Blo18g00013 Blo-Chr18:140448 9.67E-52 dispersed
Blo13g00562 Blo-Chr13:27685117 Blo18g00013 Blo-Chr18:140448 6.46E-65 dispersed
Blo17g00810 Blo-Chr17:26067385 Blo18g00013 Blo-Chr18:140448 1.07E-72 dispersed
Blo18g00013 Blo-Chr18:140448 Blo18g00822 Blo-Chr18:24257999 2.21E-72 dispersed
Blo01g01405 Blo-Chr1:52508374 Blo18g00013 Blo-Chr18:140448 1.52E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00013 Blo_Chr18 FPKM 27.74728 28.047565 17.473978 17.098484 42.870232 47.45137 42.25692 26.140461 27.294271 26.964911