Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00015 ATGCGCATCCATCTCTTGGCTTTAGCAGCCATAGCTCTAAACGTATGTGCTGCTAAGCCGCAGAGATTGATCAAACTTTGTGTTTGGGACTTGGGAGGGAGGGTGATGATACCATATCTAGTAATGCAAATTGGGAAGATTAGAATTTGGGTGGGGACGTTTGAAACGGCAGAAGACGCAGCCAGAGCCTACGATGAAGCAGCGAGGTTCATGTGCGGACCCAGGGCTCGAACCAACTTCCCTTACGACCCAAATGCTTCTCCCTCCCCATCTTCCAAGCTTCTCGGTGCAACTTTGACAGCCAAGCTTCACCGCTGCTACATGGCTTCCCTGCAACACAATAACCAAACTCCACAACACCCTCAAAAGAAGACGAGGGTGGCAGGGGCGGAGGGGAATGGGAAGGTGAAGAAAGTGAAATTGGAACAGAGTGTTGAAGAGGAGGAGATTGAGCAAATGATAGAGGAGCTCCTAGATTATGGGTCTGTGGAGCTCTGTGCATAA 504 50.0 MRIHLLALAAIALNVCAAKPQRLIKLCVWDLGGRVMIPYLVMQIGKIRIWVGTFETAEDAARAYDEAARFMCGPRARTNFPYDPNASPSPSSKLLGATLTAKLHRCYMASLQHNNQTPQHPQKKTRVAGAEGNGKVKKVKLEQSVEEEEIEQMIEELLDYGSVELCA 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 147452 148407 - BLOR08503 Blo18g00015 73319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00015 167 CDD AP2 45 83 IPR001471 GO:0003700|GO:0006355
Blo18g00015 167 SUPERFAMILY DNA-binding domain 44 82 IPR016177 GO:0003677
Blo18g00015 167 Coils Coil 136 156 - -
Blo18g00015 167 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 46 139 - -
Blo18g00015 167 MobiDBLite consensus disorder prediction 112 132 - -
Blo18g00015 167 SMART rav1_2 43 87 IPR001471 GO:0003700|GO:0006355
Blo18g00015 167 ProSiteProfiles AP2/ERF domain profile. 20 81 IPR001471 GO:0003700|GO:0006355
Blo18g00015 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 46 139 - -
Blo18g00015 167 Pfam AP2 domain 46 73 IPR001471 GO:0003700|GO:0006355
Blo18g00015 167 Gene3D AP2/ERF domain 27 82 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00015 - - - csin:114275420 133.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00015 Blo-Chr18:147452 Blo11g00568 Blo-Chr11:5409497 7.93E-12 dispersed
Blo18g00015 Blo-Chr18:147452 Blo05g00153 Blo-Chr5:1400731 3.92E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g531 . . . . Bpe02g01256 . . . Cmo05g00361 . Cma01g01479 Cma05g00357 . . Sed03g1636 . . Bhi04g00037 Tan02g2752 Cmetu03g1240 . Hepe10g0226 . Lcy13g1817 . . . . . . . Cone4ag1757 . . Cone20ag0337 . . . . . Blo18g00015 . Bda13g01247 . . . . . Cmo01g01535 . . . . Car05g00302 Cpe11g00306 . Bhi09g02975 Tan01g3590 Cmetu07g1351 . Hepe01g1984 Mch11g0520 . . . . . . . . Lsi08g01234 . . Cme07g00103
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000934 2 3 2 2 2 3 4 3 3 3 2 3 4 3 3 4 3 2 2 3 3 3 3 3 2 3 3 2 3 3 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13555 PF00847 AP2 7.20E-06 CL0081 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00015 Blo_Chr18 FPKM 3.061969 4.323738 5.090817 5.02496 4.707118 4.527414 4.405331 1.088846 1.30819 0.788067