Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00017 ATGAATGTACTCTCCATCATCCTCCCTCCGGGAGTCGTCATCACAATTGAGAGAGCCGATCCCCTAATGGAAACAGGGCCAATGAAGGGCGCTTCTTATCAAAAACATGGACGTTTCTTATCAATTTATGATCCTAAAAATCACACAAATTGGTATCCATCTTTGAAACCTGCTCTCATAATTTCATCCCTGATTTCCTTTTCTTGCTCCGAAGCCCCCCCTTTGACATGGAGAAAATCAGAAGAGCATCGCATGCTGGCTCTTGCCAAAAAATTGTCCGATGAGCTTGACGAATGGCTAAGAGCAGCTAGCTTGCCTAAATCTCCTGAAGTACGCGGCATAATTGCTCCGCATGCGGGTTATTCATATTCAGGACCTGCAGCAGCATATGCATTTGGTAACATTGATCCAACAAACATTTCTCGAATCTTCCTTCTCGGTCCATCTCACCACTACTACACTCCAAAATGTTCTCTTTCTACGGCCACGGTCTACAGGACTCCTATAGGAGATCTACCAATTGATTTGGAAGTCATCGAGGAACTGAAAGCTACAGGAAAATTTGAAGTGATGAATATTCGTGTCGATGAGGCCGAACACAGCATGGAAATGCACTTGCCTTATCTTGCTAAAGTATTCCAGGGGCATTCAGTAAAAGTTGTACCCATTTTGGTTGGTGCAGTTAAACCAGAAACCGAGGCCATGTATGGACAGCTTCTTTCCAAATATGTCGATGACCCGAGTAATTTCTTTTCTGTGTCTTCGGACTTCTGCCACTGGGGTTCTAGGTTCAACTACACGCATTATGACAAAAGGCATGGTGCAATACACAAATCAATCGAGGCCTTGGATAGAATGGGGATGGATATTATAGAAACCGGTGATCCGGATGCATTCAAGCAGTACCTGCAGGATTACGACAACACCATTTGCGGGCGCCACCCAATAAGTGTTTTTCTTCATATGTTGCAGAATTGTAGCAGTAGAATTAAGATCAAATTTCTCCGTTACGAGCAGTCTAGCCAATGTAAAACAGCCAGAGATAGCAGTGTCAGTTATGCATCTGCAGCAGCAAAGTCGGCCGGAGTTTGA 1092 44.23 MNVLSIILPPGVVITIERADPLMETGPMKGASYQKHGRFLSIYDPKNHTNWYPSLKPALIISSLISFSCSEAPPLTWRKSEEHRMLALAKKLSDELDEWLRAASLPKSPEVRGIIAPHAGYSYSGPAAAYAFGNIDPTNISRIFLLGPSHHYYTPKCSLSTATVYRTPIGDLPIDLEVIEELKATGKFEVMNIRVDEAEHSMEMHLPYLAKVFQGHSVKVVPILVGAVKPETEAMYGQLLSKYVDDPSNFFSVSSDFCHWGSRFNYTHYDKRHGAIHKSIEALDRMGMDIIETGDPDAFKQYLQDYDNTICGRHPISVFLHMLQNCSSRIKIKFLRYEQSSQCKTARDSSVSYASAAAKSAGV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 152663 156375 + BLOR08505 Blo18g00017 73321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00017 363 Hamap MEMO1 family protein <locus_tag>. 82 359 IPR002737 -
Blo18g00017 363 CDD MEMO_like 89 348 IPR002737 -
Blo18g00017 363 Gene3D - 87 360 - -
Blo18g00017 363 TIGRFAM AmmeMemoSam_B: AmmeMemoRadiSam system protein B 89 357 - -
Blo18g00017 363 Pfam Memo-like protein 90 356 IPR002737 -
Blo18g00017 363 PANTHER PROTEIN MEMO1 90 360 IPR002737 -
Blo18g00017 363 PANTHER BNAA09G41020D PROTEIN 90 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00017 K06990 MEMO1; MEMO1 family protein - rcu:8259411 464.536
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g555 . . . . . . . . . . . . . . . . . Bhi04g00020 . . . Hepe10g0239 . Lcy13g1802 . . . . . . . . . . . . . . . . Blo18g00017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007969 0 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00017 Blo_Chr18 FPKM 1.40264 4.538198 2.731456 2.233066 3.896585 3.15714 4.053753 2.219689 2.624285 2.547129