Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00018 ATGGCTACTTTGTTCAACTTCTGCAAACCCTTCACCCCTCTTCGCTTCCTGCTCCCCTTCTCCTTTCCTACTCTTCAACTCACTCGTCCCCATTCTCACCCCGCCTTCTTCAAACTTTCTACCTATAGGATTACTTCTATTCCTTCCCGCACTTCTCCCGCTGCAGTTCACTCGTCTCTAGCCCAGATAGATTCGAGTAAACCTGACGCGCATGGGAGTCATATTCCATTCTCGGAGCTTTCCCTGTTCAACACAATGAGTAAGAAAAAGGAGGTTTTCAAGCCAAAAGTGAAGGGCAAAGTTAGCATGTACGTTTGTGGAGTGACAGCCTATGATCTTAGCCATATTGGCCACGCTCGTGTCTACGTCACTTTTGATATTCTCTTCAGATATCTTCGGCAGCTGGGATATGAAGTCTGTTATGTTCGTAATTTCACTGATGTTGATGATAAGATAATTGCTAGAGCAAAGGAGCTGGGGGAGGACCCTATCAGTTTGAGCAGGCGTTATTGTGATGAGTTTTGTCTAGATATGTCGTATCTTAATTGCCTGCCTCCTTCTTTTGAACCACGAGTTTCAGATCACATGCCCCAAATCATTGATATGATAAAGCAGATAATGGAGAACGGGTACGCATACAGTGTTGATGGGGATGTGTACTTTAATGTCGACAAATTTCCTGCATATGGACTATTATCCGGGAGGAAATTGGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTGGACCATAGGAAGAAAAACCCTGCTGATTTTGCTCTATGGAAGTCCGCAAAGGAGGGCGAGCCATTTTGGGAAAGCCCATGGGGTTCGGGACGACCTGGATGGCATATTGAATGCAGTGCTATGAGTGCGAGTTATCTGGGCTATGCATTTGACATTCATGGGGGAGGCATGGACCTTATATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCAGCATGTCAACAGAGTAATATAAGTTACTGGATACACAATGGCTTTGTCAATGTCGACTCTCAAAAAATGTCTAAATCTCTGGGAAACTTTTTTACCATTCGCCAGATTCTAGACCTTTACCATCCACTGGCTTTGAGAGTTTTCTTGGTGGGGACCCATTATCGGTCTCCGATCAATTATTCAGATTCACAGCTCGAAAGTGCTTCAGATCGTATTTTCTACATCTATCAGACGCTGCATGATTGTGAAACTGCTCTGAGGCAGAACGATGCAGCAACTCTGAAGGATTCTATCAGTTCTAATACAATGAATATCATCAACAAGTTCCAAGATTCTTTTGTGACCTCAATGTCAGACGATCTTCATACTTCGGATATTTTCGCCGCCCTTTCTGACCCGTTAAAATATATTAACGATCTTTTACATACTCGTCAGGGAAAGAAGCAAGAACTGCGAATGGAATCACTTGCTGCTTTGGAAAAGATGATAGGAAATGCTTTGACAATTATTGGTCTGATGCCATCCAGCTACTCAGAGGTTTTGCAGCAGCTGAAGGAGAAGGCGCTGAAGCGGGCGGAGATGACAGAAGATCAAGTGTTGGAAAAAATTGATGAAAGAAGCGCAGCAAGAAGAAACAAGGAGTATGAGAAGTCAGATGGTATTAGGAAAGACTTGGCTGCTGTAGGCATTGCTCTAATGGACGACTCCAATGGCACTACCTGGAGGCCAACCATCCCTCTATCTCTGCAAGGCCACCTTCCTCCTGCAACTTGA 1737 44.33 MATLFNFCKPFTPLRFLLPFSFPTLQLTRPHSHPAFFKLSTYRITSIPSRTSPAAVHSSLAQIDSSKPDAHGSHIPFSELSLFNTMSKKKEVFKPKVKGKVSMYVCGVTAYDLSHIGHARVYVTFDILFRYLRQLGYEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCDEFCLDMSYLNCLPPSFEPRVSDHMPQIIDMIKQIMENGYAYSVDGDVYFNVDKFPAYGLLSGRKLEDNRAGERVAVDHRKKNPADFALWKSAKEGEPFWESPWGSGRPGWHIECSAMSASYLGYAFDIHGGGMDLIFPHHENEIAQSCAACQQSNISYWIHNGFVNVDSQKMSKSLGNFFTIRQILDLYHPLALRVFLVGTHYRSPINYSDSQLESASDRIFYIYQTLHDCETALRQNDAATLKDSISSNTMNIINKFQDSFVTSMSDDLHTSDIFAALSDPLKYINDLLHTRQGKKQELRMESLAALEKMIGNALTIIGLMPSSYSEVLQQLKEKALKRAEMTEDQVLEKIDERSAARRNKEYEKSDGIRKDLAAVGIALMDDSNGTTWRPTIPLSLQGHLPPAT 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 156665 160081 - BLOR08506 Blo18g00018 73322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00018 578 Pfam tRNA synthetases class I (C) catalytic domain 93 389 IPR032678 -
Blo18g00018 578 PRINTS Cysteinyl-tRNA synthetase signature 299 320 IPR024909 -
Blo18g00018 578 PRINTS Cysteinyl-tRNA synthetase signature 139 148 IPR024909 -
Blo18g00018 578 PRINTS Cysteinyl-tRNA synthetase signature 103 114 IPR024909 -
Blo18g00018 578 PRINTS Cysteinyl-tRNA synthetase signature 268 286 IPR024909 -
Blo18g00018 578 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 79 569 - -
Blo18g00018 578 SUPERFAMILY Nucleotidylyl transferase 79 390 - -
Blo18g00018 578 Gene3D - 383 564 - -
Blo18g00018 578 Hamap Cysteine--tRNA ligase [cysS]. 80 565 IPR015803 GO:0004817|GO:0005524|GO:0006423
Blo18g00018 578 Gene3D HUPs 65 382 IPR014729 -
Blo18g00018 578 CDD CysRS_core 82 382 IPR032678 -
Blo18g00018 578 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 415 564 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo18g00018 578 TIGRFAM cysS: cysteine--tRNA ligase 80 563 IPR015803 GO:0004817|GO:0005524|GO:0006423
Blo18g00018 578 PANTHER CYSTEINYL-TRNA SYNTHETASE 79 569 IPR024909 -
Blo18g00018 578 Coils Coil 499 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00018 K01883 CARS, cysS; cysteinyl-tRNA synthetase [EC:6.1.1.16] - csv:101210985 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g01030 Blo-Chr16:38694771 Blo18g00018 Blo-Chr18:156665 3.83E-21 dispersed
Blo18g00018 Blo-Chr18:156665 Blo03g01409 Blo-Chr3:40663099 1.06E-09 dispersed
Blo18g00018 Blo-Chr18:156665 Blo01g00505 Blo-Chr1:5591554 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g566 . . . . . . . . . . Cma01g01519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006585 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00018 Blo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.365779 0.361205 0.0 0.0 0.0