Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00019 ATGACCACTTCTTTTATATATAATTACTTTCCTTTGCAGTTTGCAGTTGCAGTTGGAGTTACGTCTCTCCTACCACCAATTGCAAGATCGGACGGTGGAGAAGAGGCGACGAGATGTGATCTCCGCCCCAGCTTCTACAACACTCCAAAAGCGACAAGCATTCACTACTGTTCTCTTCTCAATCTCCTTCCCGCCCCTGTCCCTGGGCCGGCGCCGGCGCCGGCGCGTGCCGTTTGCTCTGACATTACTACCTTAATGCTAGATCACAAGGCGTTTAAGGACACTGTTGACATTTTCGTTGAGCGTTACCGGGCCATGGACATCTCTGTTGTTGCTGGAGTTGAAGCAAGAGGATTCATGTTCGGTTCCTCAGTTGCCTATGCCATCGGCGCAAAGTTTGTTCTTTTACGTAAACCTGGGAAGTTGCCTGGTGAATTAATCTCTGAATCATATGAATTGGAGTATGGAACCGATTGCCTGGAGATGCAAGTCGACGCGATTAAAGCTGGCGAACGAGCAATAGTGATCGATGACTTGGTTGCCACGGGTGGGACACTGTCAGCTGCAATTAGGCTTCTGGAACGAAGGGAGGCTGAAGTAATCGAGTGTGCTTGTGTAATCGGGCTGCCTGAGTTGAAGTCCAATCCGACCTTTGCAGGGGCAACGCAGGCTCAACGGGAAGCCGCTGTATATCCTTGTCGAGCCTCGACAGGTCGACTGACGGCTGATAAAGTTTACTCCCTTGCTGTCTTGAGTAGCTGTAAAGTCAGCCATTTCATTAATGGCGGAAGAGAAAGCACCAAAACACGTGCCCTCTGTCTTTTGCCGGAGAAGGAGAGGGACAGACATCTTTCTCGATCTCCACTCCCGTTGCCCCACGGCCTTTTAGCATCCTTCTTTCCTTTTCTTGCCTCCCCATCACCAGCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTCAATATCCCAATTGCTTTAAGCCATTGCCTGCAATTCTGCGGTCCTGTCGAGGGGATGGCTATACTCTATACGCTGGTGGCCAGGTCGTCGGTTGTGCTCGCTGAATTTTCCGCCACTTCCACCAATGCGAGCGTCATTGCCCGCCAAATACTCGACAAACTGCCCGGCACTCATGATTCTCACGTATCCTACTCCCAGGATCGTTATATCTTTCACGTTAAGCGCACTGATGGTCTCACCGTCCTCTGTATGGCCGATGAAACTGCCGGAAGGAGAATTCCCTTTTCATTTCTGGAAGACATTCACCAGAGATTCGCAAGGACTTACGCCCGATCCAGTCATTCTGCCCAAGCGTATTCTATGAACGATGAGTTTTCGAGAGTTTTGAGTCAACAAATGAAATACTATTCAAATGAACCAAATGCAGATAGAATAAACAGACTTACAGGTGAAATGAGTCAGGTACGCGATGTCATGATAGAAAACATCGATAAAGTTCTCGAAAGAGGGGATCGCTTGGAGTTACTGGTCGATAAAACTGCAAATATGCAAGGGAACACCTTCCGATTCAGAAAGCAAGCTCGCCGATTCAGAAGTGCAGTTTGGTGGAGAAATGTCAAACTCGCGTATCGTTGCACTCGTGATAGTCATCCTAGTGATTATTTATGTGATACTGGCTGTTGTTTGTCATGGCCTTGCGCTGCCCAAGTGCTTCAAGTGAGTGCAAATGATGTCTGCTTCAATTTGCCTTTTGGCTTGTATGCTTGCGTTGGGGAAGGAGAATCTGCTGTCTGA 1752 48.52 MTTSFIYNYFPLQFAVAVGVTSLLPPIARSDGGEEATRCDLRPSFYNTPKATSIHYCSLLNLLPAPVPGPAPAPARAVCSDITTLMLDHKAFKDTVDIFVERYRAMDISVVAGVEARGFMFGSSVAYAIGAKFVLLRKPGKLPGELISESYELEYGTDCLEMQVDAIKAGERAIVIDDLVATGGTLSAAIRLLERREAEVIECACVIGLPELKSNPTFAGATQAQREAAVYPCRASTGRLTADKVYSLAVLSSCKVSHFINGGRESTKTRALCLLPEKERDRHLSRSPLPLPHGLLASFFPFLASPSPALSLSLSLSLFNIPIALSHCLQFCGPVEGMAILYTLVARSSVVLAEFSATSTNASVIARQILDKLPGTHDSHVSYSQDRYIFHVKRTDGLTVLCMADETAGRRIPFSFLEDIHQRFARTYARSSHSAQAYSMNDEFSRVLSQQMKYYSNEPNADRINRLTGEMSQVRDVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSAVWWRNVKLAYRCTRDSHPSDYLCDTGCCLSWPCAAQVLQVSANDVCFNLPFGLYACVGEGESAV 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 160537 166432 - BLOR08507 Blo18g00019 73323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00019 583 PANTHER SNARE PROTEINS 338 529 - -
Blo18g00019 583 Pfam Regulated-SNARE-like domain 366 445 IPR010908 -
Blo18g00019 583 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 711-RELATED 338 529 - -
Blo18g00019 583 SUPERFAMILY SNARE-like 340 455 IPR011012 -
Blo18g00019 583 Pfam Synaptobrevin 461 527 IPR042855 -
Blo18g00019 583 Gene3D - 460 527 - -
Blo18g00019 583 Pfam Phosphoribosyl transferase domain 107 213 IPR000836 -
Blo18g00019 583 SUPERFAMILY SNARE fusion complex 457 524 - -
Blo18g00019 583 Gene3D Longin domain 333 459 - -
Blo18g00019 583 PRINTS Synaptobrevin signature 488 507 IPR001388 GO:0016021|GO:0016192
Blo18g00019 583 PRINTS Synaptobrevin signature 468 487 IPR001388 GO:0016021|GO:0016192
Blo18g00019 583 ProSitePatterns Synaptobrevin signature. 481 500 IPR001388 GO:0016021|GO:0016192
Blo18g00019 583 SUPERFAMILY PRTase-like 80 213 IPR029057 -
Blo18g00019 583 CDD Longin 341 455 IPR010908 -
Blo18g00019 583 Gene3D - 66 223 IPR029057 -
Blo18g00019 583 SMART Longin_2 365 447 IPR010908 -
Blo18g00019 583 ProSiteProfiles Longin domain profile. 344 448 IPR010908 -
Blo18g00019 583 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 463 523 IPR042855 -
Blo18g00019 583 CDD PRTases_typeI 96 215 IPR000836 -
Blo18g00019 583 CDD R-SNARE 462 521 - -
Blo18g00019 583 Hamap Adenine phosphoribosyltransferase [apt]. 62 251 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00019 K08515 VAMP7; vesicle-associated membrane protein 7 - zju:107421170 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00861 Blo-Chr17:28084072 Blo18g00019 Blo-Chr18:160537 3.69E-57 dispersed
Blo17g00017 Blo-Chr17:98338 Blo18g00019 Blo-Chr18:160537 2.90E-69 transposed
Blo17g00015 Blo-Chr17:78497 Blo18g00019 Blo-Chr18:160537 1.77E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033417 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00019 Blo_Chr18 FPKM 0.977967 0.657327 0.803855 0.922857 2.634394 2.607484 3.068395 0.958979 0.645165 0.993253