Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00024 ATGAAATTTCATGGTTTACTGTGTTTGATAACCCTTGGGGCGTTGGCTACTCTTCTTCTTCCCCAATTCTGCTCTGCCAGTATTCTAAGAACAGGCAATATTTTACCGGGATTTCAAGGAGCTCAGATGACTTTCTACGATCGCCGTGGAATTTTTCTTTATTCCAACAATTCAGAATTCGCATTTGGGTTCCTCGTTGCACAAGACGCGACCATGTTTCTTCTCTCCGTCATCCACCGTAACAGCTCCAAAACAGTCTGGTCTGCCAACAGGGACTCCCCAGTTTCGAATTCTGATGAATTCGTGTTCGACGCAAAGGGGAACGCTTACCTCGAACGCGGCGGAAACGTTGTCTGGTCCACCGACACCGGCGATAAGGGAGTTTCTTCTCTGGCGTTGCAGGACACGGGAAATTTAGCTTTGATCGGAAACGACGGTGGAGTGATTTGGCAAAGTTTCAGCCATCCAACAGACACCCTTCTGTCAAACCAGGAATTTTCTGAAGGAATGAGGCTGACAAGCGACCGAGGAGCAAACAATTTGACGTATTTTCTGGAAATAAAGTCTGGGGATATGGTTTTATCTGTAAGTTTTCCAACTCCTCAGCCTTACTGGTCTATGAGCAAAGAGAGTCGTAAAACCGGCAACGAAGAAGACGGGGTTGTTTCTTCAGCATCTCTCGTTGCAAATTCATGGCGCATGTATAACAAAGACAAAGTCTTGCTCTGGCAATTCATCTTCTCCACCGCCACTTATGCAAACTCTACTTCTATGGCCGTCTTAGAAGACAATGGGATGATTAGCTTCCATCAATTTCCAAAAGAAAGATCGAGTATAGATTCAGCTGAGAAAATACCGGAAGATGAATGCAGCACGCCTGTATATTGTGGAGCTTATTCTGTATGTTCTACGGGCCCAAATTGTAAGTGTCTCTCTGTTCTCAACTCGGATTGCCAAACTGGGATTGTTTCTTCTTGTGGTTCATCGCAGAGTCAGATGCAGCTTGAGGATGCTGGAACTGGGCTGAATTACTTTGCTCTTGAGTTTCTTCAGCCCTTCTCTAAAACAGATTTGAATGGCTGCAAATCCTCCTGCATTTCTAACTGTTCCTGTCTAGCTTTGTTCTTCCAATCCAGTACTGAAAGTTGTTTCTTGCTTGATGGAGTCGGTAGCTTTCAGGGCTCCACCAGTGGGTCTGATTATGTTTCCTACATCAAGGTCTTGGGTGAAGGAGGAGGGAGTGGAGATGGAAATGGCCAGAAGCACCATACTTTTGCTGTTGTGATGATTGCTATTTCCACAGCCGTCGCAGTTTCTGGTTTACTCGGTTGCAGTTACAGATACATGAAGAAGAAGAAGAAGAAGAAGCAGTTATTGCCGGGATCTTCGGATGGAAGCTTGGAAGACGATAAATTCTTCGAGGACTTAGCCGGAATGCCGATTCGATTCAGTTTCAAAGATCTTCAAGATGCAACCAACGATTTCTCTGTCAAGCTGGGGCAAGGAGGGTTCGGTTCAGTCTACAGAGGCGGCCTTCCAGACGGGACTCACCTGGCGGTGAAGAAGCTGGAAGGGATCGGACAGGGGAAGAAAGAATTCCGAGCTGAAGTTAGCATCATCGGAAGCATCCATCACCTTCACTTGGTCAGGCTGAAGGGCTTCTGCGCAGAAGGAAGCCATCGTCTTCTTGCTTACGAATTCATGGCCAATGGGTCCTTGGACAAATGGATATTCAGGAAGAAGACACAGGATTCCCTATTGGATTGGGACAGAAGGTTCAACATAGCATTAGGAACAGCCAAAGGACTGGCTTACCTCCACCAAGACTGCGATTCCAAGATAATTCACTGCGACATCAAACCGGAAAACATCCTCCTTGACGACAATTTGCAGGCCAAAGTTTCGGATTTCGGCCTGGCCAAGCTGCTGACTCAAGAGCAGAGCCATGTCTTCACGCAAATGAGAGGCACGCGAGGGTACCTCGCCCCGGAATGGATCACAAACTACGCAATATCGGAGAAAAGCGACGTCTACAGCTTCGGAATGGTGCTGCTCGAGATAATCGGCGGAAGAAAAAGCTACGATCCGACAGAACCTCTGGAGAAATCTCATTTCCCGTCTTATGCATTCAAGATGATGGAAGAAGGAAAACTACGAGACATTCTCGACCCGAACCTCGCCATCAACGGACAGGACGAGAGAATTTCGACTACAACAAAGGTGGCATTGTGGTGCATTCAAGATGACTTTGTCCTAAGGCCTACCATGGCCAAAGTGGTACAAATGTTAGAAGGTGCCTGCATAGTTTGCGACCCTCCAACCTCGTCTTCATTCGGTCTTCGCCCGAATACCAACCTTTCGAATTCGATAAGCGAGGAGGGAACTTCCTCCGGTCCGTCGGATTGTAACAGCGATGCTTATATTTCTGCCGCCCGCCTTTCCGGCCCGAGGTAG 2454 47.43 MKFHGLLCLITLGALATLLLPQFCSASILRTGNILPGFQGAQMTFYDRRGIFLYSNNSEFAFGFLVAQDATMFLLSVIHRNSSKTVWSANRDSPVSNSDEFVFDAKGNAYLERGGNVVWSTDTGDKGVSSLALQDTGNLALIGNDGGVIWQSFSHPTDTLLSNQEFSEGMRLTSDRGANNLTYFLEIKSGDMVLSVSFPTPQPYWSMSKESRKTGNEEDGVVSSASLVANSWRMYNKDKVLLWQFIFSTATYANSTSMAVLEDNGMISFHQFPKERSSIDSAEKIPEDECSTPVYCGAYSVCSTGPNCKCLSVLNSDCQTGIVSSCGSSQSQMQLEDAGTGLNYFALEFLQPFSKTDLNGCKSSCISNCSCLALFFQSSTESCFLLDGVGSFQGSTSGSDYVSYIKVLGEGGGSGDGNGQKHHTFAVVMIAISTAVAVSGLLGCSYRYMKKKKKKKQLLPGSSDGSLEDDKFFEDLAGMPIRFSFKDLQDATNDFSVKLGQGGFGSVYRGGLPDGTHLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCAEGSHRLLAYEFMANGSLDKWIFRKKTQDSLLDWDRRFNIALGTAKGLAYLHQDCDSKIIHCDIKPENILLDDNLQAKVSDFGLAKLLTQEQSHVFTQMRGTRGYLAPEWITNYAISEKSDVYSFGMVLLEIIGGRKSYDPTEPLEKSHFPSYAFKMMEEGKLRDILDPNLAINGQDERISTTTKVALWCIQDDFVLRPTMAKVVQMLEGACIVCDPPTSSSFGLRPNTNLSNSISEEGTSSGPSDCNSDAYISAARLSGPR 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 191418 193871 + BLOR08512 Blo18g00024 73328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00024 817 CDD B_lectin 50 156 IPR001480 -
Blo18g00024 817 ProSitePatterns Protein kinases ATP-binding region signature. 499 522 IPR017441 GO:0005524
Blo18g00024 817 Pfam Protein kinase domain 497 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00024 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 208 IPR036426 -
Blo18g00024 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 817 - -
Blo18g00024 817 CDD PAN_AP_plant 324 407 - -
Blo18g00024 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Blo18g00024 817 MobiDBLite consensus disorder prediction 780 804 - -
Blo18g00024 817 Gene3D - 48 155 IPR036426 -
Blo18g00024 817 Gene3D Transferase(Phosphotransferase) domain 1 568 769 - -
Blo18g00024 817 ProSiteProfiles Protein kinase domain profile. 493 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00024 817 ProSiteProfiles Bulb-type lectin domain profile. 38 154 IPR001480 -
Blo18g00024 817 SUPERFAMILY Protein kinase-like (PK-like) 478 764 IPR011009 -
Blo18g00024 817 SMART blect_4 44 156 IPR001480 -
Blo18g00024 817 Pfam D-mannose binding lectin 85 167 IPR001480 -
Blo18g00024 817 Gene3D Phosphorylase Kinase; domain 1 465 567 - -
Blo18g00024 817 PIRSF SRK 6 813 IPR024171 GO:0004674
Blo18g00024 817 SMART serkin_6 493 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo18g00024 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 817 - -
Blo18g00024 817 ProSiteProfiles PAN/Apple domain profile. 326 409 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00024 - - - cpap:110806434 1058.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01390 Blo18g00024 CCT
Blo01g01390 Blo18g00024 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00265 Blo-Chr8:3347957 Blo18g00024 Blo-Chr18:191418 3.14E-91 dispersed
Blo18g00024 Blo-Chr18:191418 Blo04g00963 Blo-Chr4:11803068 1.06E-102 dispersed
Blo02g00354 Blo-Chr2:3812298 Blo18g00024 Blo-Chr18:191418 2.51E-36 transposed
Blo07g00039 Blo-Chr7:658419 Blo18g00024 Blo-Chr18:191418 4.72E-24 transposed
Blo09g00049 Blo-Chr9:771731 Blo18g00024 Blo-Chr18:191418 2.94E-141 transposed
Blo10g00572 Blo-Chr10:16907727 Blo18g00024 Blo-Chr18:191418 0 transposed
Blo11g00967 Blo-Chr11:21920627 Blo18g00024 Blo-Chr18:191418 2.18E-104 transposed
Blo12g00678 Blo-Chr12:25051664 Blo18g00024 Blo-Chr18:191418 8.59E-157 transposed
Blo13g00388 Blo-Chr13:22932953 Blo18g00024 Blo-Chr18:191418 6.19E-119 transposed
Blo01g01390 Blo-Chr1:52170977 Blo18g00024 Blo-Chr18:191418 5.81E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84809 PF00069 Pkinase 1.70E-48 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00024 Blo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.119181 0.0 0.0 0.0 0.0 0.0