Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00028 ATGGGAGAGACGAGGGACGCTGAATATGAGGACGAGCTCGTCGACTATGAAGATGAGGAGTACAAGGCATCCGACGCCGTTGGTGCCAAAGTCAATGGCGAAGCAGCGAAGAAGGGTTATGTCGGCATTCATAGCTCAGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGAAGAAAATATATGGGCCAGAATGGTTGTAGTTCTGCTGTTGTTTTCCCACTTTTCTTTATATTGCAACATGAATGTATTCCCCAAGCTATTCTGGGTATGGATGTCCTTTGTCAAGCTAAATCTGGGATGGGAAAAACTGCTGTTTTCGTACTATCCACCCTGCAGCAAATTGACCCTGTAGCGGGTCAAGTTTCTGCCCTGGTTCTTTGTCATACAAGAGAGCTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGTTCTTACTTGTCTGATCTCAAAGTGTCGGTATTCTATGGTGGTGTCAATATTAGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATTTTGGCATTGGCAAGAGATAAGGATCTTTCTCTAAAGAATGTTAGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAATCACTTGACATGAGAAGGGATGTGCAGGAGATTTTCAAGATGACGCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATTCGTCCGGTTTGCCATAAATTTATGCAAGATGTGTTTAAAATAGAATCGAGCGACTGTTTTCTTGTGGGAGTTCCTGGTGTGTTGCTCCTTGAGAACATTGGCTAA 855 42.69 MGETRDAEYEDELVDYEDEEYKASDAVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGRKYMGQNGCSSAVVFPLFFILQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDVFKIESSDCFLVGVPGVLLLENIG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 211468 213447 + BLOR08516 Blo18g00028 73332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00028 284 CDD DEADc_DDX39 45 265 - -
Blo18g00028 284 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 266 - -
Blo18g00028 284 Gene3D - 34 265 IPR027417 -
Blo18g00028 284 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 264 IPR014001 -
Blo18g00028 284 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 266 - -
Blo18g00028 284 SMART ultradead3 79 275 IPR014001 -
Blo18g00028 284 Pfam DEAD/DEAH box helicase 86 250 IPR011545 GO:0003676|GO:0005524
Blo18g00028 284 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 265 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01079 Blo-Chr12:28496511 Blo18g00028 Blo-Chr18:211468 1.33E-148 dispersed
Blo18g00028 Blo-Chr18:211468 Blo08g00257 Blo-Chr8:3271493 8.02E-30 dispersed
Blo01g01383 Blo-Chr1:52119211 Blo18g00028 Blo-Chr18:211468 3.71E-111 wgd
Blo17g00022 Blo-Chr17:127366 Blo18g00028 Blo-Chr18:211468 1.69E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00028 K12812 - csv:101217346 437.573