Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00029 ATGACTGTCGTCCTTCATTTCCTTCTGGATTCAATTAGCTTGAGGAAGGTTCCTAATTCGATTTACTGTGACATTTCTTCCTTTCAGCCTATGGAAATATATGTAGATGACGAGGCAAAGTTGACCTTGCACGGCCTTGTGCAGCACTACATCAAATTGACTGAAGCAGAGAAAAATCGCAAGTTGAATGACCTTCTAGATGCGTTGGACTTCAATCAAGTAGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTGAGCTGGATAAGTTACTGGTGGAGTGTAATTTTCCTTCTATAAGCATTCACTCTGGCATGTCTCAGGAGGAAAGGTTGACGCGATACAAAGGTTTCAAGGAGGGGCATAAGAGGATTCTTGTTGCTACAGATTTGGTTGGTCGGGGTATTGACATTGAACGTGTAAACATTGTTATTAATTATGATATGCCAGATTCTGCAGACACTTATCTACACAGGGTTGGGAGAGCTGGAAGGTTTGGTACTAAAGGGCTGGCAATTACTTTTGTATCTTCTGCTTCCGACACTGATGTTCTCAACAATTGCCATCATAATGGGGTGGTTTTGACCACCGCTGGTTGGATAGATGTTGTTCAGTTGCGGTAG 621 42.67 MTVVLHFLLDSISLRKVPNSIYCDISSFQPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSISIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDTDVLNNCHHNGVVLTTAGWIDVVQLR 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 213883 215130 + BLOR08517 Blo18g00029 73333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00029 206 Pfam Helicase conserved C-terminal domain 59 166 IPR001650 -
Blo18g00029 206 Gene3D - 42 193 IPR027417 -
Blo18g00029 206 Coils Coil 202 206 - -
Blo18g00029 206 SMART helicmild6 85 166 IPR001650 -
Blo18g00029 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 181 IPR027417 -
Blo18g00029 206 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 188 - -
Blo18g00029 206 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 188 - -
Blo18g00029 206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 61 206 IPR001650 -
Blo18g00029 206 CDD SF2_C_DEAD 46 175 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01383 Blo18g00029 CCT
Blo12g01079 Blo18g00029 CCT
Blo01g01383 Blo18g00029 ECH
Blo12g01079 Blo18g00029 ECH
Blo17g00022 Blo18g00029 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01383 Blo-Chr1:52119211 Blo18g00029 Blo-Chr18:213883 2.79E-107 dispersed
Blo18g00029 Blo-Chr18:213883 Blo02g00351 Blo-Chr2:3740960 9.80E-33 dispersed
Blo18g00029 Blo-Chr18:213883 Blo17g00022 Blo-Chr17:127366 8.84E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00029 K12812 - han:110891513 309.301