Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00037 ATGTGTTTTTGTCCAGCAACGGCCTGCTATGGGAGCGACCCTTCTCAGTTTCCGTCGAACAACATGTTTGGGTCGGCCGGAGAGGGGATATGGGACAACGGAGCCGCCTGCGGAAGGCAGTATACAGTGAGGTGCCTGAGTGGCCTCAAAAAGGGGCAATGTCTTGACCAGGACCAGACCATTCAAATCACCATTCTCGATCGAGCTACTCTCTCTCACACTACACCCTCTAAACCCGACACCACTTTGCTGCTTTCCACCACTGCTTTTGCTGCCTTAGCCAAATCTTCCGCTGCTTACGTTAACGTCGAGTTCCAACTGTAA 324 52.47 MCFCPATACYGSDPSQFPSNNMFGSAGEGIWDNGAACGRQYTVRCLSGLKKGQCLDQDQTIQITILDRATLSHTTPSKPDTTLLLSTTAFAALAKSSAAYVNVEFQL 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 255200 255523 + BLOR08525 Blo18g00037 73341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00037 107 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 6 107 IPR007112 -
Blo18g00037 107 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 6 106 - -
Blo18g00037 107 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 6 106 - -
Blo18g00037 107 Pfam Lytic transglycolase 30 105 IPR009009 -
Blo18g00037 107 Gene3D - 4 107 IPR036908 -
Blo18g00037 107 SUPERFAMILY Barwin-like endoglucanases 6 106 IPR036908 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00037 - - - rcn:112174092 124.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00808 Blo-Chr16:33849770 Blo18g00037 Blo-Chr18:255200 1.24E-30 dispersed
Blo01g01381 Blo-Chr1:52071896 Blo18g00037 Blo-Chr18:255200 2.71E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g405 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0697 Cone7ag0657 . . . . . Blo18g00037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002120 3 2 2 2 3 2 3 1 2 2 1 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 1 2 4 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00037 Blo_Chr18 FPKM 4.892256 7.417796 31.439901 31.149908 52.098148 53.28149 47.656658 36.212929 29.564035 35.538967