Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00046 ATGGATGTTCCCCCCTTGGAACAAAGTGAAACGGAAACTTACCCTTTAATAATGGAAAGATCAGAAAATCTTAACAACACTGAACACATTGTTGACGTATTAGATCCTGGCGATACTTCATCATCAAGCTTGTCTCATGATCGACAGTACACTGGGTCAAATGCATCACAGATTGAAGATAGACCTTCAAGCAGTACACGAGTGCCTACTTCTGAACCACCAATTGCTTCTAATGGATCAAACTCTAGGAATTCCTCGTTCATTAGGAGAGGGAACACACGTCGTCGACAGAGTCCATTGAATTCCAGTTTATGGATATCTATTGAACTTGTTCTTACTCTAAGTCAGATTGTTGCGGCTGTAACTGTTTTATCATTATCGAGGCATGAGCATCCACGTGCCCCATTGTTTGAGTGGATTGTGGGATATGCATCTGGTTGTGTTGCTACCCTCCCTCTTCTCTACTGGCGCTATAGACATCGAAACCAGGCTTTAGAGCAAGATTCATCTCAATCTCGCCAGAATTCTACTCAAGTTTCTCTTTCAGCTTCTAGGACATCAGAATGGGAAGATCGCCCAACCACTGTCTCTCCTCCTAGAAGCAATCAAAGTTTTGGTGCACTTAGTGCGAGGCTGAAGATATTGGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCTGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGAGGGCACTCTTCAGCCTCAGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTTACCTTTAGTTGTATCGGATATGCGATGCCCTTCATTCTATGCGTGACCATCTGCTGTTGTCTGCCCTGTATAATTTCCGTCCTTGGGTTTAGAGAAGATCTTTCACAAACTAGGGGTGCCACTACTGAATCAATCGATGCTTTGCCTACATACAAGTTCAAGGTGAAGAAAAGTAAAAGTGGGGATGAAAGCAACTCAGGTGGTGGTGAAGGTGGGATTGTGGCTGCTGGAACGGAGAAGGAACGCTTTATTTCTGGTGAAGATGCAGTTTGTTGCATCTGCCTGGCTAAGTACTCCAACAATGATGAATTGAGAGAGTTGCCATGTTCTCACTTCTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATCAACGCCTTATGCCCTCTCTGCAAGGCGGAGGTTGGCGAGAGCATCTTAGGGTCATTCAACGGCTCAAGCGATAACCACCACCAAGGCGATAATAGGGCAGCGGCCACCTTGACCCTGTTTTAA 1272 44.1 MDVPPLEQSETETYPLIMERSENLNNTEHIVDVLDPGDTSSSSLSHDRQYTGSNASQIEDRPSSSTRVPTSEPPIASNGSNSRNSSFIRRGNTRRRQSPLNSSLWISIELVLTLSQIVAAVTVLSLSRHEHPRAPLFEWIVGYASGCVATLPLLYWRYRHRNQALEQDSSQSRQNSTQVSLSASRTSEWEDRPTTVSPPRSNQSFGALSARLKILVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISVLGFREDLSQTRGATTESIDALPTYKFKVKKSKSGDESNSGGGEGGIVAAGTEKERFISGEDAVCCICLAKYSNNDELRELPCSHFFHKDCVDKWLKINALCPLCKAEVGESILGSFNGSSDNHHQGDNRAAATLTLF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 306739 308890 + BLOR08534 Blo18g00046 73350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00046 423 MobiDBLite consensus disorder prediction 36 94 - -
Blo18g00046 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 410 - -
Blo18g00046 423 SUPERFAMILY RING/U-box 342 397 - -
Blo18g00046 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 398 IPR013083 -
Blo18g00046 423 MobiDBLite consensus disorder prediction 167 202 - -
Blo18g00046 423 Pfam Ring finger domain 350 391 IPR001841 -
Blo18g00046 423 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Blo18g00046 423 SMART ring_2 350 390 IPR001841 -
Blo18g00046 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 410 - -
Blo18g00046 423 SMART ringv_2 349 391 IPR011016 GO:0008270
Blo18g00046 423 MobiDBLite consensus disorder prediction 32 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00199 Blo-Chr3:4665945 Blo18g00046 Blo-Chr18:306739 5.93E-48 dispersed
Blo11g00077 Blo-Chr11:585960 Blo18g00046 Blo-Chr18:306739 1.28E-29 dispersed
Blo18g00046 Blo-Chr18:306739 Blo01g00215 Blo-Chr1:2798147 1.60E-12 dispersed
Blo03g00497 Blo-Chr3:18086362 Blo18g00046 Blo-Chr18:306739 1.44E-54 transposed
Blo06g00675 Blo-Chr6:29871000 Blo18g00046 Blo-Chr18:306739 7.09E-133 transposed
Blo17g00036 Blo-Chr17:205414 Blo18g00046 Blo-Chr18:306739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00046 - - csv:101211818 619.387