Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00047 ATGGTACCTGGTTCTTCGAAGCAAATGAGTGGAGACGATGGTTCTGACCCCTTTTCCGCCATTGTTGATCTCCTGCAATCCCACTATTTGTATGCGTCGCGATCTCCATCCAGATCCAGGTTTTCTGCTTGGTCGGTCGTGGAATTGGGGCTGTTCTGTGTTTTGGTGGAGGTGAATTTTGGTGTTGCCGCTCAAGGGATTTGGATCTCGTATTTGTGGAGAACCGGGGGTGAGGTGTGTAAAATGCCTGTAAAAGCAGCGCAATCGTCATATAGGGATCGAACACAAGAATTCCAGACAGTTGCAGAGAGGCTGAAGAAGTCTTTCTCATCATCTTCTGAGCAAAATGGGCAGATTAATGGTTTGAAATTAGAGGATCAGCGATCTGCAGTTGCAATTCAGTCTGAATTTAATAAGAGAGCTTCCAAAATTGGGTATGGAATACACCAGACATCGCAAAAACTTTCAAAGCTGGCTAAGTTGGCAAAGAGAACATCAGTTTTTGATGATCCCACCGTGGAAATTCAGGAATTGACAGCCCTTATCAAGCAAGATATTACTGCATTGAACTCTGCAGTCGTTGACCTTCAGCTGCTTTCCCATTCCAGAAATGATAGTGGGAATGTCTCCAGTGATACAACTAGTCATTCAACCACTGTTGTAGATGACCTGAAGAATCGGTTAATGAGTGCTACAAAAGAATTCAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAGGTTCATGAAAACAGAAGACAACTGTTTTCTTCCACCGCTTCCAAAGATTCTGCCAATCCTTTTGTTCGTCAGCGCCCATTAGTTTCCAGGTCAGCAGCTACCACATCAAATGCACCTCCTCCTCCATGGGCAAATGGATCAACATCCTCGTCCCAGTCATTTAATAGAAAGCAGGCAGATGGGGAGAGTCAGCCACTGCTCCAACAGCAGCAGCAACAACAGCAGTTGGTTCCATTGCAGGACAGTTACATGCAGAGCAGGGCTGAAGCTCTGCAAAATGTTGAGTCCACTATTCATGAGTTGAGCAGGATTTTCAACCAGCTCGCAACCCTTGTGTCCGAACAAGGAGAAATTGCCATCAGAATTGATGAGAACATGGATGACACTGTGGCAAATGTAGAGGGAGCGCAGGGAGCTCTTCTCAAGTATTTAAACAGCATATCTTCGAATAGGTGGCTGATGATAAAAATATTCTTCGTGTTAATATTTTTCCTTATGGTCTTCCTATTTTTCGTCGCATAG 1263 44.58 MVPGSSKQMSGDDGSDPFSAIVDLLQSHYLYASRSPSRSRFSAWSVVELGLFCVLVEVNFGVAAQGIWISYLWRTGGEVCKMPVKAAQSSYRDRTQEFQTVAERLKKSFSSSSEQNGQINGLKLEDQRSAVAIQSEFNKRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTVEIQELTALIKQDITALNSAVVDLQLLSHSRNDSGNVSSDTTSHSTTVVDDLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSSTASKDSANPFVRQRPLVSRSAATTSNAPPPPWANGSTSSSQSFNRKQADGESQPLLQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSRIFNQLATLVSEQGEIAIRIDENMDDTVANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 315482 319992 - BLOR08535 Blo18g00047 73351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00047 420 CDD SNARE_syntaxin5 331 409 - -
Blo18g00047 420 SMART tSNARE_6 323 390 IPR000727 -
Blo18g00047 420 Gene3D - 132 383 - -
Blo18g00047 420 Pfam SNARE domain 364 416 IPR000727 -
Blo18g00047 420 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 88 107 IPR021538 -
Blo18g00047 420 PANTHER SYNTAXIN-32-LIKE 83 419 - -
Blo18g00047 420 ProSitePatterns Syntaxin / epimorphin family signature. 334 373 IPR006012 GO:0005484|GO:0006886|GO:0016020
Blo18g00047 420 PANTHER SYNTAXIN 83 419 IPR045242 -
Blo18g00047 420 MobiDBLite consensus disorder prediction 276 318 - -
Blo18g00047 420 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 328 390 IPR000727 -
Blo18g00047 420 SUPERFAMILY t-snare proteins 135 383 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00243 Blo-Chr4:1874000 Blo18g00047 Blo-Chr18:315482 8.70E-86 transposed
Blo17g00037 Blo-Chr17:220725 Blo18g00047 Blo-Chr18:315482 5.68E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00047 K08490 - jre:109009619 491.115