Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00051 ATGGCTGCCACTGCAACTTCTTCTTCTTCGCTAGCTCTGTTTCCCGCTAAGTTGGTCTTCAGAGGAGGCGTCGAGACTTCGAAAGCCAAGTTTTTGAACCCCTGTTTGAAACCTTCGACTCTATGCCTATCGATTTCCGTTCCGGTTCAGAATTCGAAGCGCGCAAGCCTCAAGATATGGTCGTCCGTTTCAATGTCTTCCCCGGACGTTCGAACGAGCCCTGCGGATCTCGTAGATTCTATTATCTCAAAGGTTGCGCAAAGTGATAGAGGGGTTTTTCTTACCAAAGACGAACACAAAGAGGTAGCTGAAGTGGCTCAGGAATTGCAGAAATACTGTGTTGACGAACCCGTAAAATGCCCTCTTATATTCGGAGATTGGGACGTGCTATACTGTTCTAATCCAACATCGCCAGGAGGCGGCTACAGAAGCGCAGTTGGCCGTCTTTTCTTCAAAACGAAGGAGATGATTCAGGTCGTCGAAGCTCCGGACAGTGTCAAAAATAGGGTGTCATTTTCTGTTTTCGGGTTCTTGGATGGCGAAGTCTCCTTGAAAGGAAAACTGACAGCTCTGGACCAAGATTGGATTCAAGTTATCTTCGAATCGCCGGAATTGAAAGTCGGACCTTTTGAATTCCGCTACGGCGGTGAAGCGAAAGAAATGGCCGAGGACAAAGGCATTGGGGAGGCAGTAAAGAAGGATACTGTCGGTGTTGTCAGTGATCATACTACGACTTCTGGAACTGAAAAGAAGAAGAGCCGGGGAATATTCTCTAAAATCTGGAATGGAATTTTCAGAGTACGAGGGGATGACTTTGAGAAGAGGCTTCAAAATATCTCTAAAGAAGAAGGTGTTGTTTTGGCGAGGCTGAAGAGACGATCCCAAACTTTGCGGCATATTAGCCGAAATTTGATTATATTTTCTGTAGTTTTGGAGATTATTGCAGTTGGTTATGCTATCATGACAACTAGAACTGCGGATCTGAACTGGAAGATGAGAGCCTTTCGAGTTTTGCCGATGTTTCTTTTGCCTGGCTTATCAACTATTATTTATTCGACAATGATGAGTTTTACGAGGATGCGAGATCGGAAAGACCAGAAAACTCTTGAAAGGCTTAGATCTGAGAGGCAAGCAAAAATAGATGAGCTTAAAGAGAGGACTAATTATTACATCACTCAACAACTTATTCAGAAATATGATTCTGACCCAGCTGCAAAGGCAGCAGCTGCCTCTGTGTTAGCGTCAAAGTTGGGTGCAGATTCAGGCTTGAAAGTGTTCCTTGAGAACGAGTCAAAGCTTAATGTTGCATCAGGAAAGAGCAATGATGTTGAAATTATGCAATCTGGCAGCCTTAGAAATAGAAAACAAGTTCACCCGCAACCAAACAGTTTGGGAGGCAGTCCATCGCATCCTTCCCATGAGGAGACACCTGTTTCTGCAGTGTCAGATAGTCATCATAGTTCTGAGCTCAGTCAGCTCGTAGTTAATCATCACAATCCTCAAGTACCAGTTGCCAAAGATGGAGGATGGGTTGCAAGGATCGCAGCACTACTTGTGGGTGAGGATCCAATGCAGTCATATGCACTCATTTGTGGAAATTGCCACATGCATAATGGGCTTGCTAGGAGGGAAGATTTTCCTTACATTACATACTACTGCCCTCACTGCCACGCCCTTAACAGGCCCAAACAATCAGAAGAACAAGTTTCTGGTTCCATTATTTCAAGTCCGGGCACCGACAGATCCAGAGACAGCGGTGACACAGCAAATGATGCCAATCTTTCTCAAGGTGAGATTGTTCTCACATCCAATCAGCCCACAGGAGGAGGTAGTTCAAAGGCTGAGGCTGTTACAGAAACGATAGTGTCTTCAGATTTAGCTGATGAATAG 1890 45.03 MAATATSSSSLALFPAKLVFRGGVETSKAKFLNPCLKPSTLCLSISVPVQNSKRASLKIWSSVSMSSPDVRTSPADLVDSIISKVAQSDRGVFLTKDEHKEVAEVAQELQKYCVDEPVKCPLIFGDWDVLYCSNPTSPGGGYRSAVGRLFFKTKEMIQVVEAPDSVKNRVSFSVFGFLDGEVSLKGKLTALDQDWIQVIFESPELKVGPFEFRYGGEAKEMAEDKGIGEAVKKDTVGVVSDHTTTSGTEKKKSRGIFSKIWNGIFRVRGDDFEKRLQNISKEEGVVLARLKRRSQTLRHISRNLIIFSVVLEIIAVGYAIMTTRTADLNWKMRAFRVLPMFLLPGLSTIIYSTMMSFTRMRDRKDQKTLERLRSERQAKIDELKERTNYYITQQLIQKYDSDPAAKAAAASVLASKLGADSGLKVFLENESKLNVASGKSNDVEIMQSGSLRNRKQVHPQPNSLGGSPSHPSHEETPVSAVSDSHHSSELSQLVVNHHNPQVPVAKDGGWVARIAALLVGEDPMQSYALICGNCHMHNGLARREDFPYITYYCPHCHALNRPKQSEEQVSGSIISSPGTDRSRDSGDTANDANLSQGEIVLTSNQPTGGGSSKAEAVTETIVSSDLADE 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 344476 351860 - BLOR08539 Blo18g00051 73355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00051 629 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 510 560 IPR019273 -
Blo18g00051 629 MobiDBLite consensus disorder prediction 451 490 - -
Blo18g00051 629 MobiDBLite consensus disorder prediction 562 629 - -
Blo18g00051 629 Pfam PAP_fibrillin 79 206 IPR006843 -
Blo18g00051 629 MobiDBLite consensus disorder prediction 563 619 - -
Blo18g00051 629 Coils Coil 366 386 - -
Blo18g00051 629 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 238 620 - -
Blo18g00051 629 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 238 620 IPR040115 GO:0071786
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00051 K23292 LNPK; endoplasmic reticulum junction formation protein lunapark - jre:109009593 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00039 Blo-Chr17:242339 Blo18g00051 Blo-Chr18:344476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g221 . . . . . . . . . . . Cma05g00638 . . . . . Bhi04g01065 . . . . . Lcy13g1705 . . . . . . . Cone4ag1847 . . . . . . . . Blo18g00051 . . . . Bma01g01305 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002677 3 5 2 1 1 1 3 0 1 1 2 1 3 2 2 3 1 3 3 1 1 1 1 2 2 1 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00051 Blo_Chr18 FPKM 24.104795 26.071436 10.952922 7.896451 13.145739 12.515263 17.273867 5.782063 7.159286 8.967051