Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00055 ATGGGCGGGCTGGCTCGGCCCGGGCCCGTAGACGAGCAGAGCCGAGCCCGAGCACCTGGGCTCGTGAGCTCTCCGAGCCCGGGCTCTCGAGCCTGGCGGGCTGGCCCGGCGAGCCAGCCTGCCAGACCTCTGCCCGGGCTCGGGGTCGATGAAGCTCGCCAGTCGCCAGCTCGAGCTCGAGCAGCGAAGGTCGACGAAGACGAAGGCTTAGTTCGTCCAAGCAGCGAGAGATCTCGGAGACGGAGGTCGACGGAGACGAAGGTCGACGAAGACGAAGCTGGAGTCTGCCGTCTGGATCTTGCGTCTCCCATATGCCAGTGCTGGATCTCGCGTCGAAGAGTGTTGTCGTGGCGTCGAAGGATGAACGAAGCTCGTCGTCGGGGCGTCGAGGCGTCAACGAACGCAGGTCATCGCAGTCTGCCAGTCGAGGGCTCGTCGTCTTCTTCGTTCGATGCTGGATCTCGTCGTCTCGCGGGAGTAGCCATGGCGAGCGACTCTGAAGAATCGCTGAAGAAGAAGCCCAGAAAAGCCTCGTTTCCTGGAGAGTCTTCTCGCAAGAATATAATAACGCACGAGGAAGATATTCAGTTGAAGACTACACGAGCTCGTTTTTCGGAAGTTCTGAGAAGACATTCCGAATTAGCAGAACGCCTTTCAAGGGATTCTGACAAGATGTTATATGAGCGTTTACAGAGAGAATTTGATGCTGCACTAGCTTCTCAAACTCAAGAAATTTTTTTAGATGGTGAACAGTGGAATGATGGTCTATTAGCCACAGTAAGAGAGCGAGTTCACATGGAAGCTGACAGGAAGGCTATGGCTGCAGATGCGGACGTAGTGCCTGATTCTCCTTCTCAGGAAAAGATCACGTACAAAGTTGGAATATCGATAGATGTAACGTGGATTTTGAATTCAAGTCAAGTTATTTGCTGTTTGGAAGGGCCAAGGATTGGCATACAATATGGGACTTCTTATGCTGGCGAGCCTTGTGAATTTTACCATTGTGTGCTGGAGAGCAAGTCATTTCTTGAAAAGATGACTGTACTTGAACATACAATTCCGTTTTTTCTACCAATACGGGAAACAGAAAATGACCTTCTCTCCTCCAATGCCATGAAATTCATAGATCATCTTGGAGAACTTTTGCAGGCCTATGTGGACAGACGAGAACAGGTCCGGCTTATCAAGGAGTTATATGGACATCAAATCAAAGAGCTGTATCATAGCCTGCCATACCACATGATTGACTTTTTACTTGATGATTTTGATTGCAAAGTTACAGTCAGCATTACATATGCAGATCTTGTCTCTGTTCTCCCAAGTCAAATTAAAGTGTTTGTTTGGCCACTACTATCCAAGAAAAATATGGTCAATTCAATAGCTATAAATCAAAAGGAAAATGAAGAACTTGGAAATCACCCTTTTCCGGCTCGCCTATCCTATGCAGAGGATGCTTTACGAACCATGAGCTTACCCGAAGGTTATTACTATTTCCTAGTGAATAACATTCTTTCCTCTATTGAAAGAAATCTTTCTTTACCCACTTAG 1548 48.32 MGGLARPGPVDEQSRARAPGLVSSPSPGSRAWRAGPASQPARPLPGLGVDEARQSPARARAAKVDEDEGLVRPSSERSRRRRSTETKVDEDEAGVCRLDLASPICQCWISRRRVLSWRRRMNEARRRGVEASTNAGHRSLPVEGSSSSSFDAGSRRLAGVAMASDSEESLKKKPRKASFPGESSRKNIITHEEDIQLKTTRARFSEVLRRHSELAERLSRDSDKMLYERLQREFDAALASQTQEIFLDGEQWNDGLLATVRERVHMEADRKAMAADADVVPDSPSQEKITYKVGISIDVTWILNSSQVICCLEGPRIGIQYGTSYAGEPCEFYHCVLESKSFLEKMTVLEHTIPFFLPIRETENDLLSSNAMKFIDHLGELLQAYVDRREQVRLIKELYGHQIKELYHSLPYHMIDFLLDDFDCKVTVSITYADLVSVLPSQIKVFVWPLLSKKNMVNSIAINQKENEELGNHPFPARLSYAEDALRTMSLPEGYYYFLVNNILSSIERNLSLPT 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 380328 386544 - BLOR08543 Blo18g00055 73359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00055 515 PANTHER INNER KINETOCHORE SUBUNIT MAL2 176 496 IPR018464 GO:0000776|GO:0034508
Blo18g00055 515 MobiDBLite consensus disorder prediction 125 182 - -
Blo18g00055 515 MobiDBLite consensus disorder prediction 166 182 - -
Blo18g00055 515 MobiDBLite consensus disorder prediction 138 153 - -
Blo18g00055 515 MobiDBLite consensus disorder prediction 1 91 - -
Blo18g00055 515 Pfam Cenp-O kinetochore centromere component 314 435 IPR018464 GO:0000776|GO:0034508
Blo18g00055 515 MobiDBLite consensus disorder prediction 56 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00055 K11507 CENPO; centromere protein O - zju:107420790 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo18g00055 Blo-Chr18:380328 Blo04g01295 Blo-Chr4:27476362 1.10E-20 dispersed
Blo03g00799 Blo-Chr3:33198888 Blo18g00055 Blo-Chr18:380328 2.14E-12 transposed
Blo17g00042 Blo-Chr17:273067 Blo18g00055 Blo-Chr18:380328 1.70E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g203 . . . . . . . . . . . Cma05g00631 . . Sed03g1540 . . Bhi04g01080 Tan02g2627 Cmetu03g1566 . Hepe10g0316 . Lcy13g1343 . . . . . . . . Cone7ag1761 . . . . . . . Blo18g00055 . Bda13g01295 . . Bma01g01310 Bma02g00052 . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003905 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 9 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00055 Blo_Chr18 FPKM 6.4931 6.545022 7.424787 7.611193 4.807922 4.391316 4.83744 14.778141 13.67442 14.664911