Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo18g00056 ATGCAGCCTCAGAAGTGTTGGAGAATCGATTTGAGCGAGTTAAAAGCTTTGATTGCAAAGAAGCTTGGATCAAACAAGTCGAAACAGTATTTCTATTACTTGAATAGATTTTTGGGTCAAAAGTTGAGCAAGAATGAGTTTGATAAATTGTGTCTTCGGGTGCTTGGGAGGGAGAATATCGAGCTCCACAATCAGTTTATACAGTCGATTTTGAAGAATGCTTGTCAGGCGAAGACCCCACCTCCGATTCCAGTCTCCGGCCGTTCAAACTCAGTAGAAGCAGCTGCAAACAGTTCTATCAGAGAAGATGGGTATGAACAACGAGCCGGAATTCTTGCAAATCACAATCAAAGCATTCCTATTTGGTCAAACGGCACTGTCCCACCGCTTTCACGAAAGAGTAGGAATACGACTCATGATCAGAAGCTCAAGGATAGGCCAAGTCTGCTTGGACCGAATGAAAAATTGCATCATATTTCACATCAATCAATATGTGCAGGAGATAATGGCAGCAAAGTTGTGGTTGACAATGGAAATTTGATTCCCTGTGATTATCACAGACCATTGCAGCATCTTCAATCAGTTTCTGCTGAACTCCCCATCAACAATTTGGAGGGTACAGCTCTTCGACAGGCAGAAAAACAAGTTGAAGATGGGGAAGAGGCCAACAAGTTGAATTACTTTCGGAGACCTATCCTTGCCCCCCTTGGAATTCCCATGTTGTCAGCCGGGATGGGTGGGCCCTGCAAGTCCATTCCTATAGGCCACACTTTCGACAGTCCCAGCTATTTCGACACTGGTGGGTTATCCGATGCGGAGACTCTGAGAAAACGGATGGAGCTAATTGCAATATCCAAGGGATTGGGAAGTGTTTCTATGGAATGTGCTAATGTTTTAAATGATGTGTTGGATGTGTACTTGAAGCGGTTAATCAGGTCTTGCGTTGATCTGGTTGGAGCTAGATCGACATACCAGTCTAGAAGTCATTTTCCTCATAAACAACAGATTCAAGGAAAACCCATCAATGGGATTTGGCCAAACAATCATTTACATATGCAGAATGGCAGTGAACCTGCAGAAGTTATGCAGGAACAGAAGTCTCCGTCTATATCACTGCTCGATTTTAAAATAGCGATGGAGCTTAATCCAAAGCAGCTTGGGGGAGATTGGCCTCTGCGATTGGAGAAAATCTGCATGCACCCATTTGAACAATGA 1215 43.79 MQPQKCWRIDLSELKALIAKKLGSNKSKQYFYYLNRFLGQKLSKNEFDKLCLRVLGRENIELHNQFIQSILKNACQAKTPPPIPVSGRSNSVEAAANSSIREDGYEQRAGILANHNQSIPIWSNGTVPPLSRKSRNTTHDQKLKDRPSLLGPNEKLHHISHQSICAGDNGSKVVVDNGNLIPCDYHRPLQHLQSVSAELPINNLEGTALRQAEKQVEDGEEANKLNYFRRPILAPLGIPMLSAGMGGPCKSIPIGHTFDSPSYFDTGGLSDAETLRKRMELIAISKGLGSVSMECANVLNDVLDVYLKRLIRSCVDLVGARSTYQSRSHFPHKQQIQGKPINGIWPNNHLHMQNGSEPAEVMQEQKSPSISLLDFKIAMELNPKQLGGDWPLRLEKICMHPFEQ 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 388378 389592 + BLOR08544 Blo18g00056 73360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo18g00056 404 MobiDBLite consensus disorder prediction 135 152 - -
Blo18g00056 404 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 8 318 IPR024738 GO:0070461
Blo18g00056 404 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 403 IPR024738 GO:0070461
Blo18g00056 404 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 403 - -
Blo18g00056 404 MobiDBLite consensus disorder prediction 123 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo18g00056 - - - zju:107420804 478.404
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00273 Blo18g00056 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00078 Blo-Chr3:2676539 Blo18g00056 Blo-Chr18:388378 4.78E-50 dispersed
Blo12g01101 Blo-Chr12:28702941 Blo18g00056 Blo-Chr18:388378 1.04E-130 dispersed
Blo17g00043 Blo-Chr17:285586 Blo18g00056 Blo-Chr18:388378 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001290 3 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 2 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo18g00056 Blo_Chr18 FPKM 67.603622 70.828995 67.925308 72.915489 80.543159 82.620735 79.037247 97.362717 98.838257 99.940048